BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZE10FM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1439                                                        1179   0.0  

>3x_Contig1439 
          Length = 7662

 Score = 1179 bits (595), Expect = 0.0
 Identities = 637/647 (98%), Gaps = 3/647 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   attcaaaagttgcagttggtgactaagtcttctgagaaagaaggcgaaagggattcagac 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4565 attcaaaagttgcagttggtgactaagtcttctgagaaagaaggcgaaagggattcagac 4624

                                                                        
Query: 146  agagatgtacttggtgagagaagagaacaaggaggatcacatggaccgttaaggacaccc 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4625 agagatgtacttggtgagagaagagaacaaggaggatcacatggaccgttaaggacaccc 4684

                                                                        
Query: 206  ttgactgcaacatcagtatcattcacggttcccgagcatcaggataaagtcattgcgcat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4685 ttgactgcaacatcagtatcattcacggttcccgagcatcaggataaagtcattgcgcat 4744

                                                                        
Query: 266  aggctttctatttccacaagaccctcatcgaccaaattgggcactccaaccacagtagcc 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4745 aggctttctatttccacaagaccctcatcgaccaaattgggcactccaaccacagtagcc 4804

                                                                        
Query: 326  tcttctagcgaagctcctcccaccatcacaccagtgaattctatcagttccacaactcgt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4805 tcttctagcgaagctcctcccaccatcacaccagtgaattctatcagttccacaactcgt 4864

                                                                        
Query: 386  gaaccggacacgggtcatgttaccaacacgtcaacggcggctactaatactgccaatact 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4865 gaaccggacacgggtcatgttaccaacacgtcaacggcggctactaatactgccaatact 4924

                                                                        
Query: 446  tcttgagctggatcatctcgtcagaactctgtgcacatacctggtgatttcatctatttc 505
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4925 tctggagctggatcatctcgtcagaactctgtgcacatacctggtgatttcatctatttc 4984

                                                                        
Query: 506  gaagctaaaccaaataaccggacgcgccacggtggtgatggcgcagtgtcccct-aaatg 564
            |||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 4985 gaagctaaaccaaataacgggacgcgcaacggtggtgatggcgcagtgtcccctaaaatg 5044

                                                                        
Query: 565  acaggtgtcctggaccgtgaactatcaccctctgccacgtctcttgattattatgacccc 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5045 acaggtgtcctggaccgtgaactatcaccctctgccacgtctcttgattataatgacccc 5104

                                                                        
Query: 625  atcgctggcgtcgccgccaagaaggctactaccaagaaacgaattagtgaagaaggaacc 684
            ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 5105 atcgctgccgtcgccgccaagaaggctactaccaagaaacgaatcagtgaag-aggaacc 5163

                                                           
Query: 685  acacgttccttttaccgaaattgtttcaaaaaaaggatgatgaaaaa 731
            ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 5164 acacgttccttttaccg-aattgtttcaaaaagaggatgatgaaaaa 5209


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6393
Number of Sequences: 1807
Number of extensions: 6393
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)