BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE10RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1757 1318 0.0
>3x_Contig1757
Length = 24754
Score = 1318 bits (665), Expect = 0.0
Identities = 780/813 (95%), Gaps = 4/813 (0%)
Strand = Plus / Minus
Query: 40 tacctggttgtataccaaggaattgggccacgttatgctgttgagtcttggtaatgaatg 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2464 tacctggttgtataccaaggaattgggccacgttatgctgttgagtcttggtaatgaatg 2405
Query: 100 cacatctatctttaccgtaaaatacttttttgttcgaatagtatggatcgatggaaccga 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2404 cacatctatctttaccgtaaaatacttttttgttcgaatagtatggatcgatggaaccga 2345
Query: 160 tatttgcaactgctttgatggcagcgaatatggaagtaaaatgaacaaatgcaattcctc 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2344 tatttgcaactgctttgatggcagcgaatatggaagtaaaatgaacaaatgcaattcctc 2285
Query: 220 tgtcttcaaccaatttgatactttcaatttcaccgaattgggacaaatcatcataaagtt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2284 tgtcttcaaccaatttgatactttcaatttcaccgaattgggacaaatcatcataaagtt 2225
Query: 280 tctccttagttactaggatttcctttggatcagcaccccatttttcacatgagtccttat 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2224 tctccttagttactaggatttcctttggatcagcaccccatttttcacatgagtccttat 2165
Query: 340 tggtgtttaatttaccgatgtacacgtttcttgtcgcaccgtcattagctataccagcac 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2164 tggtgtttaatttaccgatgtacacgtttcttgtcgcaccgtcattagctataccagcac 2105
Query: 400 gaacgatgggatcaataggttgcggtttgccccatccgatcttgatatcacgcccatcga 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2104 gaacgatgggatcaataggttgcggtttgccccatccgatcttgatatcacgcccatcga 2045
Query: 460 tatttagtcttttcaggatggcatcagaatggaacaacaaggcatcgttctcatccacaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2044 tatttagtcttttcaggatggcatcagaatggaacaacaaggcatcgttctcatccacaa 1985
Query: 520 atgaaacgaatgcgcacatcttttcagataaaatcttaacttcttccactacaccggtac 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1984 atgaaacgaatgcgcacatcttttcagataaaatcttaacttcttccactacaccggtac 1925
Query: 580 gcacgtaatccaacaatgccttgttagtaatggtagcaggaatgttacctagattaactg 639
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 1924 gcacgtaatccaacaatgccttgtaagtaatggtagcaggaatgttacctagataaactg 1865
Query: 640 ttctttgaagcgccgtagtaaaatctcttggattattctactgccccgactgtaacgaga 699
||||| | ||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 1864 ttcttgaaggcgccgtagtaaaatctcttggattattcaactggcccgactgtaacgag- 1806
Query: 700 agaagcaagttagcctccgctgttaaatgcgcaatcatgttgacagtaaaactattaatt 759
||| ||||||||||||||||||| || ||||||||||||||||||||| | || | ||
Sbjct: 1805 agaggcaagttagcctccgctgtaaattgcgcaatcatgttgacagtagacata-tgatc 1747
Query: 760 ttttggtttttcagacataacgtttgactgttattggaaacaaaaatttttaaaagggcc 819
|| ||||| | ||||||||||| ||||||| ||||||| ||||||||| | || ||| |
Sbjct: 1746 ttgtggttctgcagacataacg-ttgactggtattggagacaaaaattctgaagaggccg 1688
Query: 820 attgtgaaattgtaataatccaaaaacttttgc 852
||||| || ||| ||||||||||| ||| ||||
Sbjct: 1687 attgtaaagttg-aataatccaaatactcttgc 1656
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7387
Number of Sequences: 1807
Number of extensions: 7387
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)