BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE11FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1170 0.0
>3x_Contig1426
Length = 8319
Score = 1170 bits (590), Expect = 0.0
Identities = 733/773 (94%), Gaps = 6/773 (0%)
Strand = Plus / Minus
Query: 85 aagaccggtgttcccatatgcaaaccaagataatcggctttcttccacgtattgaaatag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 aagaccggtgttcccatatgcaaaccaagataatcggctttcttccacgtattgaaatag 1713
Query: 145 tccatggtttggatgaaacaattccctagtcaataaaaggaaccattctttctttaaacc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 tccatggtttggatgaaacaattccctagtcaataaaaggaaccattctttctttaaacc 1653
Query: 205 gccagcatcgattccaggctcattcgagaactccactcttagggattttttcaaatcatg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 gccagcatcgattccaggctcattcgagaactccactcttagggattttttcaaatcatg 1593
Query: 265 tggatgtcgttgaatggacgttagcgaatcctgtgtcacatggcttcgtcttacctttat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 tggatgtcgttgaatggacgttagcgaatcctgtgtcacatggcttcgtcttacctttat 1533
Query: 325 tcggaaatgtacatcgtaaagtttacgagagtccaacgcctttaagaacgcttgctcagc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 tcggaaatgtacatcgtaaagtttacgagagtccaacgcctttaagaacgcttgctcagc 1473
Query: 385 gttatgttccatcattttcccagtttcgaactccattatggctatcttaacgcctaagga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 gttatgttccatcattttcccagtttcgaactccattatggctatcttaacgcctaagga 1413
Query: 445 catcaaaaaagggtactggcataaggcagtatagtgcgtttcatgtaactgtgtcatgga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 catcaaaaaagggtactggcataaggcagtatagtgcgtttcatgtaactgtgtcatgga 1353
Query: 505 taaatcgtcaagggtccttcattgctctctattcatcttatgccacatcataaaatcacg 564
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 taaatcgtcaagggtcctccattgctctctattcatcttatgccacatcataaaatcacg 1293
Query: 565 ttttgtatcaatgaaatcaattatcatatttgtaaaaaccgagatgtcacattttggctt 624
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1292 tttgtaatcaatgaaatcaattatcatattgtaaaaaaccgagatgtcacattttggctg 1233
Query: 625 gtcacaatgagcttgaaagtatatggttcattanctgacacaccgtgccgattatgccag 684
||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||
Sbjct: 1232 ttcacaatgagcttgaaagtatat-gttcattagctgacacaccgtg-cgaatatgccag 1175
Query: 685 tcaagtccgtattttttaatttctgaacctgcctctcttacgggattcttttgccttccg 744
|||||||||||||||| || ||||||||||| |||||| |||| | ||||||||||||||
Sbjct: 1174 tcaagtccgtatttttcaa-ttctgaacctg-ctctctaacggta-tcttttgccttccg 1118
Query: 745 gggtggaaaagat-agaaacagttccattttgggttttatccccagccaatgatttattt 803
||||||||||||| ||| |||||||||| || ||||| |||| ||| | |||||| | ||
Sbjct: 1117 gggtggaaaagataagatacagttccatctttggtttcatccacaggcgatgattcagtt 1058
Query: 804 aaaaccgtgcctgaaaatccttgggggaaatgcggggaaccgggtcctttttt 856
|| | ||| ||||| |||||| | || ||||||| | |||||||||| ||||
Sbjct: 1057 aacaacgttcctgataatcctcgtggtgaatgcggcggaccgggtcctatttt 1005
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5786
Number of Sequences: 1807
Number of extensions: 5786
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)