BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE11RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1449 0.0
>3x_Contig1686
Length = 15382
Score = 1449 bits (731), Expect = 0.0
Identities = 838/864 (96%), Gaps = 9/864 (1%)
Strand = Plus / Plus
Query: 47 ctttaccaaatatcttgaatatgtttgataagtctctatggcaatacgcccaagacttgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13545 ctttaccaaatatcttgaatatgtttgataagtctctatggcaatacgcccaagacttgt 13604
Query: 107 tcgccatggaaaaaatcgatgtcaagttaaagactatggttaagaacgtcaactctacta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13605 tcgccatggaaaaaatcgatgtcaagttaaagactatggttaagaacgtcaactctacta 13664
Query: 167 ccatcactgcccaatgtggtgatgcaactgaagatatcccatacggtttgttggtttggg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13665 ccatcactgcccaatgtggtgatgcaactgaagatatcccatacggtttgttggtttggg 13724
Query: 227 ctactggtaacgctccaagagaagtttccaagaacttgatggctaaattggaacaacaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13725 ctactggtaacgctccaagagaagtttccaagaacttgatggctaaattggaacaacaaa 13784
Query: 287 attccagacgtggtttattgatcaatgacaagatgcaactattaggcgctgaagactcca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13785 attccagacgtggtttattgatcaatgacaagatgcaactattaggcgctgaagactcca 13844
Query: 347 tttgggccattggtgactgtactttcttcccaggtcttttcccaacagctcaagtggcac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13845 tttgggccattggtgactgtactttcttcccaggtcttttcccaacagctcaagtggcac 13904
Query: 407 atcaagaagctgaatacttgactgaaactttgaaacaacaatacaagattgatcaattga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13905 atcaagaagctgaatacttgactgaaactttgaaacaacaatacaagattgatcaattga 13964
Query: 467 aatgggaaatctcgaaaactactaatgccactgaaacttctaaattgcactccaagttgg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13965 aatgggaaatctcgaaaactactaatgccactgaaacttctaaattgcactccaagttgg 14024
Query: 527 acagaattgtgaaacaacaaaaacctttcaaatacaaccaccaaggtacccttgcttaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14025 acagaattgtgaaacaacaaaaacctttcaaatacaaccaccaaggtacccttgcttaca 14084
Query: 587 ttggttcagaacaagccattgctgacgttgctgtcggtgaatcc-aatatcanatggccg 645
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 14085 ttggttcagaacaagccattgctgacgttgctgtcggtgaatccaaatatcaaatggccg 14144
Query: 646 gntctttcaccttcttattctggaagtctgcttacctaggnatgtgtctctcctttcag- 704
| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 14145 gttctttcaccttcttattctggaagtctgcttacctagggatgtgtctctcc-ttcaga 14203
Query: 705 aacagaatcttgntcgctatggactgggctaaagtttactttcttagtagagactcatcg 764
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 14204 aacagaatcttggtcgctatggactgggctaaagtttacttcctaggtagagactcatcg 14263
Query: 765 gtatgaaaatctgaatgggttaacgtctgatttcggatcaa-cacatcctaattttttc- 822
||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 14264 gtatg-aaatctgaagtggttaacgtctgatttctgatcaatcacatcctaattttttct 14322
Query: 823 tttttcttgctcccattgncttat-catttacgcctga-gagacaggatngattactgat 880
|||||||||||||||||| ||||| ||| |||| |||| |||||| ||| ||||||||||
Sbjct: 14323 tttttcttgctcccattgtcttatccatctacg-ctgaggagacaagattgattactgat 14381
Query: 881 ccgggttcagncatttaacattaa 904
| || ||||| |||||||||||||
Sbjct: 14382 cgggtttcagtcatttaacattaa 14405
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7919
Number of Sequences: 1807
Number of extensions: 7919
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)