BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE12FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig259 642 0.0
>3x_Contig259
Length = 1602
Score = 642 bits (324), Expect = 0.0
Identities = 423/446 (94%), Gaps = 8/446 (1%)
Strand = Plus / Minus
Query: 224 tcattttaggaaccgtttcgatgatcaatgttgagtataacggtaagacgatgcaagc-a 282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1602 tcattttaggaaccgtttcgatgatcaatgttgagtataacggtaagacgatgcaagcca 1543
Query: 283 actgcagtaggaacttctggcattaccactgctactgacacacaatcgagaacgtcacag 342
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 actgcagtaggaacgtctggcattaccactgctactgacacacaatcgagaacgtcacag 1483
Query: 343 acggtaaacagtatcctcacagcgactagactaagcacaatttttctaattggggtctcc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1482 acggtaaacagtatcctcacagcgactagactaagcacaatttttctaattggggtctcc 1423
Query: 403 acgcaggcttcggtcttactttcactatattggatcacatctcangtttattcgttgatt 462
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1422 acgcaggcttcggtcttactttcactatattggatcacatctcaggtttattcgttgatt 1363
Query: 463 cagaacagaattctcgatttgctatggccatatcagagataatggagcttttatctttt- 521
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1362 cagaacagaattctcgatttgctatggccatatcagagataatggagcttctatctttta 1303
Query: 522 acacatataagttaattaaatcgtttataaaac-ttcactggacatagntaata-ttctg 579
||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||| |||||
Sbjct: 1302 acacatataagttaatttaatcgtttataaaactttcactgtacatagttaatatttctg 1243
Query: 580 tttagcaaacaatgtcttttgttcgaa-ctttaca-caagaggggtccttattt-ttttt 636
||||||||||| || |||||||||| ||| ||| ||||| |||||||||||| || ||
Sbjct: 1242 tttagcaaacagtggtctttgttcgaagcttcacagcaagatgggtccttatttcttctt 1183
Query: 637 g-cctttagcttctttttttgctttg 661
| ||| ||||||||||| ||||||||
Sbjct: 1182 gccctctagcttcttttcttgctttg 1157
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7951
Number of Sequences: 1807
Number of extensions: 7951
Number of successful extensions: 106
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)