BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZE12RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1498 1195 0.0
>3x_Contig1498
Length = 12634
Score = 1195 bits (603), Expect = 0.0
Identities = 711/743 (95%), Gaps = 3/743 (0%)
Strand = Plus / Plus
Query: 49 atggatttgtttaagaaactatcttcaaacaatttattgtagtaacccaccagctaaaga 108
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 10544 atggatttgtttaagaaactatcttcaaagaatttattgtagtaacccaccagctaaaga 10603
Query: 109 gcgggaaaaaaaaacgggtagcagaaaggatcagatatagttcggtcctgaattgggctt 168
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 10604 gcgggaaaaaaaaacgggtagcagaaagggtcagatatagttcggtcctgaattgggctt 10663
Query: 169 aactaaggcttggttcactcaccaattgtaatggatatccttaaacaagttgtactatga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10664 aactaaggcttggttcactcaccaattgtaatggatatccttaaacaagttgtactatga 10723
Query: 229 ccgctcatctcttctctcacaccatgtccttcaaattttttgatacttgaagctatcata 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10724 ccgctcatctcttctctcacaccatgtccttcaaattttttgatacttgaagctatcata 10783
Query: 289 ttgaacggtaaagctataacataagcagatcagacacaaatataaaggtttgtgatcata 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10784 ttgaacggtaaagctataacataagcagatcagacacaaatataaaggtttgtgatcata 10843
Query: 349 ctatcaggggctgccactgcacaattgcggcgaatgttcaccacgtcagtgcttcattga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10844 ctatcaggggctgccactgcacaattgcggcgaatgttcaccacgtcagtgcttcattga 10903
Query: 409 attcttataacttacttttgaactgagtaaaatcgattttcattatctagtgaaatcgga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10904 attcttataacttacttttgaactgagtaaaatcgattttcattatctagtgaaatcgga 10963
Query: 469 gatatcatgatttgtataagatacataacacaatatacattggattggtaaggtgaatta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10964 gatatcatgatttgtataagatacataacacaatatacattggattggtaaggtgaatta 11023
Query: 529 cctatcgtattgagacgagaactggcgatcatctgatactttgtaataaatacctgatag 588
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 11024 cctatcgtattgagacgagaactggcgatcatctgatacttggtaataaatacctgatag 11083
Query: 589 aagacagacggttaagtttgggaggaagttcaccaaagttttcatgtagtcatcgaagaa 648
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11084 aagacagacggttaagtttgggaggagtttcaccaaagttttcatgtagtcatcgaagaa 11143
Query: 649 aatggaaat-acctggcgtaaatgggtttatgcaaattcgtc-aaagggcagtttttgtc 706
| |||||| ||||| || |||||| |||||| ||||||| ||| ||||||| | |||
Sbjct: 11144 atgggaaatcacctgcgttagatgggtatatgcagattcgtcaaaatggcagttatagtc 11203
Query: 707 cctgaaatgataaaccttttcgtatccgggaaaat-ccacaattgttgggtcgggaaaac 765
| ||||||||| || |||||||||||| |||||| ||||| |||||| ||||| ||
Sbjct: 11204 ctggaaatgatagacgttttcgtatccgtgaaaatcccacatttgttgcgtcggagaata 11263
Query: 766 ctgcaaggcttttaaaccccaat 788
|||||| ||||||||| ||||||
Sbjct: 11264 ctgcaatgcttttaaatcccaat 11286
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7636
Number of Sequences: 1807
Number of extensions: 7636
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)