BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF01FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig928 864 0.0
>3x_Contig928
Length = 1948
Score = 864 bits (436), Expect = 0.0
Identities = 581/616 (94%), Gaps = 10/616 (1%)
Strand = Plus / Plus
Query: 140 atatatgtaggccggaacagattgttcttcgcaaatgtaaactaacttatgtgttaatgt 199
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||
Sbjct: 1 atatatgt-ggccggaacagattgttct-cgcaaatgtaa-ctaacttatgtgtta-tgt 56
Query: 200 acaaatatgaatatatttcaaatttaaatcttaataatattagttatgcttatgtccagt 259
||||||| || ||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct: 57 acaaatagga-tatatttcaaagt-aaatctgaataatattagttatgcttatgtccagt 114
Query: 260 ttggataatatggcactagttattttaaaactattcaagcttgaagtgtatatttttatg 319
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 t-ggataatatggcactagttattttaaaactattcaagcttgaagtgtatatttttatg 173
Query: 320 atattacctatacaatactttctaaatgaacagcatagtcaatagccatatccacggtat 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atattacctatacaatactttctaaatgaacagcatagtcaatagccatatccacggtat 233
Query: 380 ccccactctctatcctgtctggagttgaatcatttccaaatgtgataacgccatggttga 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ccccactctctatcctgtctggagttgaatcatttccaaatgtgataacgccatggttga 293
Query: 440 cgctccagtcacgttctttagcgaacgcctccatctccttttcattctcgaagaatagta 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cgctccagtcacgttctttagcgaacgcctccatctccttttcattctcgaagaatagta 353
Query: 500 gagtcttagcgttgaacaatggtaaggagctatatgcttgttcagaattcaaagcaattt 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gagtcttagcgttgaacaatggtaaggagctatatgcttgttcagaattcaaagcaattt 413
Query: 560 -ctctcttatagcctctttc-aagtctttgtgaaaacatttgacttcttcacctttaaaa 617
||||||||||||||||||| ||||||||||||||||| |||| |||||| | ||| ||
Sbjct: 414 cctctcttatagcctctttcaaagtctttgtgaaaaca-ttgaactcttcaaccttagaa 472
Query: 618 cctgtttgtaacagatcccaacccttttgataagaaccttcccattaaagtcttttccac 677
||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||
Sbjct: 473 cctgtttgtaacagatcccaagccttttgataagaaccttccatcaaaagtctttccaac 532
Query: 678 tttactggattaaagaggtacaaacttttttccaaattcctaacttatttgctcaaaaac 737
|||||||||| | |||||||| |||| | |||||||||| |||| ||| |||||||||||
Sbjct: 533 tttactggataagagaggtacgaactctcttccaaattcgtaacgtatctgctcaaaaac 592
Query: 738 ttaatttctgagtgaa 753
| || |||||||||||
Sbjct: 593 tcaaattctgagtgaa 608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7885
Number of Sequences: 1807
Number of extensions: 7885
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)