BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF02FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1369 813 0.0
>3x_Contig1369
Length = 7461
Score = 813 bits (410), Expect = 0.0
Identities = 485/502 (96%), Gaps = 6/502 (1%)
Strand = Plus / Minus
Query: 86 cttgatactttctaagaatcttgtctttaacaacggattcgtagtcctactggctttatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008 cttgatactttctaagaatcttgtctttaacaacggattcgtagtcctactggctttatt 1949
Query: 146 ccggtttaattctaacgtactttctagttccctcaattcatcaagtaataattctctgtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1948 ccggtttaattctaacgtactttctagttccctcaattcatcaagtaataattctctgtg 1889
Query: 206 ttgctcttcttcgttagcaccatcgttgtctgagacacgtgacttagttgttcctgttgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1888 ttgctcttcttcgttagcaccatcgttgtctgagacacgtgacttagttgttcctgttgt 1829
Query: 266 aactgatccggataatccatcagcaccgttctcttcatcctcctcttcttcatcctcttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1828 aactgatccggataatccatcagcaccgttctcttcatcctcctcttcttcatcctcttc 1769
Query: 326 ttccttctcttcttcctcttcgtcctcctcctcttcgtcttcatcatcaccgttatcttg 385
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1768 ttcctcctcttcttcctcttcgtcctcctcctcttcgtcttcatcatcaccgttatcttg 1709
Query: 386 ttcaacgtcatcaccggtctcctcaag-agttgtcctggtcttacaacactgccagtatc 444
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1708 ttcaacgtcatcaccggtctcctcaagaagttgtcctggtcttacaacactgccagtatc 1649
Query: 445 tgtagacatcgttgctccagccggtccatttacccatgc-tgccggtatag-accatcag 502
||||||||||| |||||||||||||||| ||| |||||| ||||||||||| ||||||||
Sbjct: 1648 tgtagacatcgctgctccagccggtcca-ttaaccatgcttgccggtatagaaccatcag 1590
Query: 503 tagtttctttttgtagagctggttccaaattccaattc-agatcttctttatgatccctt 561
|||||||| ||||||||||| ||||| ||||||||||| |||||||||| ||||||| |
Sbjct: 1589 tagtttctgtttgtagagcttgttcc-aattccaattcaagatcttcttcatgatcctct 1531
Query: 562 tccttattttctttcgcggcac 583
|||| || ||||| ||||||||
Sbjct: 1530 tcctcatcttcttccgcggcac 1509
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,964
Number of Sequences: 1807
Number of extensions: 14964
Number of successful extensions: 258
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)