BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF02RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1681 1515 0.0
>3x_Contig1681
Length = 11798
Score = 1515 bits (764), Expect = 0.0
Identities = 875/904 (96%), Gaps = 6/904 (0%)
Strand = Plus / Plus
Query: 48 accgtttgatttgttctctacaattgtgtatggtaacacatccaaatccttttgtgtctc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4885 accgtttgatttgttctctacaattgtgtatggtaacacatccaaatccttttgtgtctc 4944
Query: 108 tgaatcctggaaagatctcccgattaatctcttagtagcaaagaaggtattctccgaatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4945 tgaatcctggaaagatctcccgattaatctcttagtagcaaagaaggtattctccgaatt 5004
Query: 168 aattagtgactgtctcttcgctgctgctccgactaaaactttcccgttcttatcaaatgc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5005 aattagtgactgtctcttcgctgctgctccgactaaaactttcccgttcttatcaaatgc 5064
Query: 228 aacgactgatggtgttgttctttgtccctcgtcattctcaatgattgatgctgacttttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5065 aacgactgatggtgttgttctttgtccctcgtcattctcaatgattgatgctgacttttt 5124
Query: 288 atcgtttgaatccctaatgtaggcaacagcactgttggtggtccctaaatctattccgat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5125 atcgtttgaatccctaatgtaggcaacagcactgttggtggtccctaaatctattccgat 5184
Query: 348 cactttggtactggcatatctcacacacctgttactgaagaattttgcagtttgaggcct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5185 cactttggtactggcatatctcacacacctgttactgaagaattttgcagtttgaggcct 5244
Query: 408 gagtcttagcattgttgtttgtatatgtacagcgtggcttatactgtatggcttaacttg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5245 gagtcttagcattgttgtttgtatatgtacagcgtggcttatactgtatggcttaacttg 5304
Query: 468 caggatagtatcttttcaattaatgatctaccttggacgaatacattggtgtcactgaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5305 caggatagtatcttttcaattaatgatctaccttggacgaatacattggtgtcactgaat 5364
Query: 528 tgctaaagagaagtatgctttttttttttaggtattatacattatgcacattatgaaaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5365 tgctaaagagaagtatgctttttttttttaggtattatacattatgcacattatgaaaaa 5424
Query: 588 atatgggtcatgtgactggaagcttgccggttattggcggtgaaacggttcgaagtgctt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5425 atatgggtcatgtgactggaagcttgccggttattggcggtgaaacggttcgaagtgctt 5484
Query: 648 tgtttcagaagctaccgctaagttacgtatgtaacttatccatgagttgtagaacaagaa 707
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5485 tgttccagaagctaccgctaagttacgtatgtaacttatccatgagttgtagaacaagaa 5544
Query: 708 cattatcttc-gtggatgtttgtctgaccaagtaatcaagtctctgcttttttgttatgg 766
|||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct: 5545 cattatcttcggtggatgtttgtctgaacaagtaatcaagtctctgctttttgttaatgg 5604
Query: 767 tgagaaattcatgaatatctgggtcgtctacatggtagtgaacatttgatagggagttcc 826
|||||||||||||| |||||||||||||||| |||||||||| ||||||| |||| |
Sbjct: 5605 tgagaaattcatgatattctgggtcgtctacattgtagtgaacaattgatagtgagtcca 5664
Query: 827 cttccggcaaataaaacatatttttt-ccatcgggcgcaagaagcttaaaacag-ctctt 884
||| |||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||
Sbjct: 5665 ctt-cggcaaataaaacatattttttcccatcgtgcgcaagaagctcaaaacagtctctt 5723
Query: 885 ttacttttta-attaaaattccgtacaaggctcgggtgatcattttcgtt-cgtttgacc 942
| |||| ||| || | ||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct: 5724 tcacttcttatatcataattcgttacgaggctcgggtgatcattttcgttacgtttgacg 5783
Query: 943 aatt 946
||||
Sbjct: 5784 aatt 5787
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,638
Number of Sequences: 1807
Number of extensions: 11638
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)