BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF03FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1539 1283 0.0
>3x_Contig1539
Length = 11016
Score = 1283 bits (647), Expect = 0.0
Identities = 762/789 (96%), Gaps = 10/789 (1%)
Strand = Plus / Minus
Query: 87 tatgaatcacagcttgacaaactacaatcacagatagattctttggatcaacaactttac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8578 tatgaatcacagcttgacaaactacaatcacagatagattctttggatcaacaactttac 8519
Query: 147 tcgatagaaaatgctaatttgaatttggaaactttgaaggcaatgaaacaaggtgcatct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8518 tcgatagaaaatgctaatttgaatttggaaactttgaaggcaatgaaacaaggtgcatct 8459
Query: 207 gcaatgaaaaatatccataaggggctagatctagataaagtggatgatactatggatgaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8458 gcaatgaaaaatatccataaggggctagatctagataaagtggatgatactatggatgaa 8399
Query: 267 atcagagaacaagttgaactaaaccaagaaatcagcgaggctatttctaaaccgttgata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8398 atcagagaacaagttgaactaaaccaagaaatcagcgaggctatttctaaaccgttgata 8339
Query: 327 ttacaagatgagttggacgaggacgaattagaccaggagttggaactgctagaatcggaa 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8338 ttacaagatgagttggacgaggacgaattagaccaggagttggaactgctagaatcgg-a 8280
Query: 387 aacttgcaaaaggaacacattgcccctgtacctcagcaacaaatacaacaaccttcaata 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8279 aacttgcaaaaggaacacattgcccctgtacctcagcaacaaatacaacaaccttcaata 8220
Query: 447 gacttaccgtctgtacccgacgtcaaattatctactccagaacttaatagtgcccaagca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8219 gacttaccgtctgtacccgacgtcaaattatctactccagaacttaatagtgcccaagca 8160
Query: 507 gatgaggaagacgaagaagaggatgaagatgaacgtgcattaagagaactacaagctgaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8159 gatgaggaagacgaagaagaggatgaagatgaacgtgcattaagagaactacaagctgaa 8100
Query: 567 atgggattgtagaaaaaacaaaaaatgtgcatatgttatacgttntatctttctctccct 626
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 8099 atgggattgtagaaaaaacaaaaaatgtgcatatgttatacgttttatctttctctccct 8040
Query: 627 taa-ttcccta-taccatatattg-atgtcatttaactttacctttcc-gtgaaatattt 682
||| ||||||| |||||||||||| |||||||||||| |||||||||| ||||| |||
Sbjct: 8039 taatttccctattaccatatattgaatgtcatttaaccttacctttccggtgaatagttt 7980
Query: 683 taaatgtgtatgatatagagtatctatataatattactactaactgtgattaatctattt 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7979 taaatgtgtatgatatagagtatctatataatattactactaactgtgattaatctattt 7920
Query: 743 caaagacgaataatgataatcgttctagtatttagtttactaaaaccctta--caggaaa 800
|||||||||||||||||||||||||||||||| ||||||||||||||| || || |||
Sbjct: 7919 caaagacgaataatgataatcgttctagtattcagtttactaaaacccataacaagaaaa 7860
Query: 801 attcaaatttaatcgc-aatatttttacagcccatcat-tatttatactgatatta-caa 857
|| ||||| ||||||| |||||||| |||||| ||| |||| ||||||||||| |||
Sbjct: 7859 atacaaatataatcgcaaatattttcacagccatccatctattattactgatattatcaa 7800
Query: 858 aatatttta 866
|||||||||
Sbjct: 7799 aatatttta 7791
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8324
Number of Sequences: 1807
Number of extensions: 8324
Number of successful extensions: 116
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)