BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF03RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1283 1604 0.0
>3x_Contig1283
Length = 6261
Score = 1604 bits (809), Expect = 0.0
Identities = 850/859 (98%), Gaps = 4/859 (0%)
Strand = Plus / Minus
Query: 48 taccagagtgtctaccgaagacaccatgcaaatttggaccgaccttgtgtggaccaccgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4272 taccagagtgtctaccgaagacaccatgcaaatttggaccgaccttgtgtggaccaccgg 4213
Query: 108 cttcaacggtgtgacattgcaaacatctggtcttgaacaaagtagcacccttcttttcgg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4212 cttcaacggtgtgacattgcaaacatctggtcttgaacaaagtagcacccttcttttcgg 4153
Query: 168 aacccttcttgtatggagctggcattatgactttatattagttgtgttggttgtgtaaca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4152 aacccttcttgtatggagctggcattatgactttatattagttgtgttggttgtgtaaca 4093
Query: 228 gttatttgatttgacgaatcaatccttaatactgatagtttgggaaactttaattaagat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4092 gttatttgatttgacgaatcaatccttaatactgatagtttgggaaactttaattaagat 4033
Query: 288 agaaaggagaaaaaagaaaacgctaaaaagacttgctaaagaaacatcaaattcaatcga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4032 agaaaggagaaaaaagaaaacgctaaaaagacttgctaaagaaacatcaaattcaatcga 3973
Query: 348 atatcaaatcttaatatgttagttatatatgaaattatcaacaaaccatagtgcgcatac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3972 atatcaaatcttaatatgttagttatatatgaaattatcaacaaaccatagtgcgcatac 3913
Query: 408 taaaatttttctcctacctgtttttaactacttaaaccgaaaaaatgcttcgaaacaagt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3912 taaaatttttctcctacctgtttttaactacttaaaccgaaaaaatgcttcgaaacaagt 3853
Query: 468 ctatcatttcgggaacatcggtcaagacacgagatgagccaaattctgtgaagcctctga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3852 ctatcatttcgggaacatcggtcaagacacgagatgagccaaattctgtgaagcctctga 3793
Query: 528 gacttttttctcattggtttcccgttgtgcgttttgctgcagggtaatcttaatggggat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3792 gacttttttctcattggtttcccgttgtgcgttttgctgcagggtaatcttaatggggat 3733
Query: 588 taaagcgtggggaaaagcaattcttgtcagaggttggacgtcactgtgaacggaagcgat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3732 taaagcgtggggaaaagcaattcttgtcagaggttggacgtcactgtgaacggaagcgat 3673
Query: 648 ctgattggttggctgatgtatgttacagtcacgtgatacgtactgaccggcacgtgacaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3672 ctgattggttggctgatgtatgttacagtcacgtgatacgtactgaccggcacgtgacaa 3613
Query: 708 ttaacttaatggtaatggttctggaatatctctgatcagtgttaccctgagaagaatgat 767
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3612 ttaacttaatggtaatggttctggaatatctctgatcagtgttaccctgagaag-atgat 3554
Query: 768 a-tttttcgctcatattatctgtatttgacatcaatagagtatttattnacttcattctg 826
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3553 attttttcgctcatattatctgtatttgacatcaatagagtatttatttacttcattctg 3494
Query: 827 ntnctttgcgtgaatatcggtatatgtcacacgtgacttttggtgtgctcttcgttagtg 886
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3493 -ttctttgcgtgaatatcggtataatgcacacgtgacttttggtgtgctcttcgttagtg 3435
Query: 887 ccgatac-aaaagcgtgcc 904
||||||| |||||||||||
Sbjct: 3434 ccgatacgaaaagcgtgcc 3416
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6489
Number of Sequences: 1807
Number of extensions: 6489
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)