BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF04FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1125 1185 0.0
>3x_Contig1125
Length = 5749
Score = 1185 bits (598), Expect = 0.0
Identities = 779/826 (94%), Gaps = 12/826 (1%)
Strand = Plus / Plus
Query: 85 tacagcctcatcagacgactagttattactgtactgactgtgctttttttatttgatata 144
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3613 tacagcctcatcagacgactagttattactgtactgactgtgccttttttatttgatata 3672
Query: 145 agaggagaatttaatataatcgagatactaaaccgaaaacatattaagaaataagaactg 204
||||||||||||||||||||||||||||||||||| ||||||||||| ||| || || ||
Sbjct: 3673 agaggagaatttaatataatcgagatactaaaccggaaacatattaaaaaaaaaaaaatg 3732
Query: 205 gtcattgggcatattttgagagttgtaagattctaaactgatattgatatttagaaaagc 264
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3733 gtaattgggaatattttgagagttgtaagattctaaactgatattgatatttagaaaagc 3792
Query: 265 tggaaataacaacgaatagaagtttaaacaggaatcaacgaataacagcagtgaaaaaaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3793 tggaaataacaacgaatagaagtttaaacaggaatcaacgaataacagcagtgaaaaaaa 3852
Query: 325 ttgaaactattatcaacacattataattgaattggtgcaaatgaattatccgcctccctt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3853 ttgaaactattatcaacacattataattgaattggtgcaaatgaattatccgcctccctt 3912
Query: 385 gtcaggattccagaaacctgctgggcaagcggtgcctcagatggtgggtacgccgcaagc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3913 gtcaggattccagaaacctgctgggcaagcggtgcctcagatggtgggtacgccgcaagc 3972
Query: 445 tgttactcagcagcttcaccagcatccgccaggtttgatgggaaatcaaggaaaccaaca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3973 tgttactcagcagcttcaccagcatccgccaggtttgatgggaaatcaaggaaaccaaca 4032
Query: 505 tcagccggcccaactaaacaatgtccttcctatgatgatgaaccaggttcagaatgtgat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4033 tcagccggcccaactaaacaatgtccttcctatgatgatgaaccaggttcagaatgtgat 4092
Query: 565 aactggcggtgcagggggaccacagcaagctgtgggtcctccttatgttggaaacactaa 624
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 4093 aactggcggtgcagggggaccacagcaagctgtgggtcctcctaatgttggaacacctaa 4152
Query: 625 tgcagcnccagctgcgttagtggctcagcaattgtccaatgggct-ataattcg-tatgc 682
|||||| | |||||||||||||||||||||||||||||| ||| ||||| || |||||
Sbjct: 4153 tgcagcccaggctgcgttagtggctcagcaattgtccaat--gctaataatccgttatgc 4210
Query: 683 cattcacatttagcggacccctccgttgttgatttcaccaatttggaaagtacagctttc 742
||| |||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||
Sbjct: 4211 catccacatttagcggacccct-cgttgttgaattcaccaatttggaagttacagc-ttc 4268
Query: 743 aattggctgcagttttcagacagtcttttgggtcaatcgaatgtgtatgctatnacaaac 802
||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 4269 aattggctgcagtttccagacagtc-tttgggtcaatcgaatgtgtatgctagacaaaac 4327
Query: 803 gccatgaaaaaattctttaattattcaaaat-agttgggactgtttactaagggccagna 861
|||||||| || ||| |||| || ||||||| |||||||||||| |||||| ||||| |
Sbjct: 4328 gccatgaagaagttc-ttaaataatcaaaatcagttgggactgtctactaatggccaaga 4386
Query: 862 ttggcgttcaagtaccaacagcagca-ggccagcaacaacaaccaa 906
|||||||| ||| ||||||||||| |||||||||||||||||||
Sbjct: 4387 -tggcgttc-agtcacaacagcagcagggccagcaacaacaaccaa 4430
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7027
Number of Sequences: 1807
Number of extensions: 7027
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)