BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF04RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1252 1528 0.0
>3x_Contig1252
Length = 5616
Score = 1528 bits (771), Expect = 0.0
Identities = 841/863 (97%), Gaps = 5/863 (0%)
Strand = Plus / Plus
Query: 49 catcaattcaggaccaattaaggaatacacaatatcaaaacctttaccaaatcacttcta 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4147 catcaattcaggaccaattaaggaatacacaatatcaaaacctttaccaaatcacttcta 4206
Query: 109 cagacatttttggcgtgttcgtgaagaacacattggttcatattatgaaaatgaagctcg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4207 cagacatttttggcgtgttcgtgaagaacacattggttcatattatgaaaatgaagctcg 4266
Query: 169 aatctttactaggcaaagttcttcacttgattcatctttgtgttgtcaataacctggcag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4267 aatctttactaggcaaagttcttcacttgattcatctttgtgttgtcaataacctggcag 4326
Query: 229 actttgaacgaatattttggcatgagtatcatcttgacgagtctgagaatgggttttatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4327 actttgaacgaatattttggcatgagtatcatcttgacgagtctgagaatgggttttatc 4386
Query: 289 atagtatcggatctttactctacaattttctatcttcggatgactttaacgtagagaatg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4387 atagtatcggatctttactctacaattttctatcttcggatgactttaacgtagagaatg 4446
Query: 349 gtaagatcagagagatattccgatttttgaaagatcgggcaccacacattaatgtggacg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4447 gtaagatcagagagatattccgatttttgaaagatcgggcaccacacattaatgtggacg 4506
Query: 409 attacctctcagaacagactccaaattatgaccccagaattttgttcactgatataagtg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4507 attacctctcagaacagactccaaattatgaccccagaattttgttcactgatataagtg 4566
Query: 469 aatcggaaaacgaggagtacattaagaagaagatgttagcaaagtcgagaagagaaaaac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4567 aatcggaaaacgaggagtacattaagaagaagatgttagcaaagtcgagaagagaaaaac 4626
Query: 529 ttatgcagaagctagccaaacaacaaaaggaattcatggataacaacaatgtttctgcag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4627 ttatgcagaagctagccaaacaacaaaaggaattcatggataacaacaatgtttctgcag 4686
Query: 589 aggatattagctcacaaggaaccaatctcgataactctgctatcggtatatgttggacat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4687 aggatattagctcacaaggaaccaatctcgataactctgctatcggtatatgttggacat 4746
Query: 649 atccggaagatgattgtgtattttgcaagatgcccaaagattatgatgttntatcatact 708
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4747 atccggaagatgattgtgtattttgcaagatgcccaaagattatgatgttttatcatact 4806
Query: 709 ttgtatttgtcgaacgcaatgttgtttctatcaatttagctttcgatgacanaacannag 768
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
Sbjct: 4807 ttgtatttgtcgaacgcaatgttgtttctatcaatttagcttcggatgacaaaacaaagg 4866
Query: 769 atgtagaantttcaccggtgcttancacttgtggccactgtgctcattttcgttgcttac 828
|||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 4867 atgtagaatttcaaccggtgcttacaacttgtggccactgtgctcatttcggttgcttac 4926
Query: 829 tatcacatatgaaatctttgaaaaaaagtcta-ggcaatttac--aaaatataagagat- 884
||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||
Sbjct: 4927 tatcacatatgaaatctttgagaaaaagtctagggcaaattaccaaaaatataagagata 4986
Query: 885 -ctttggtttatcctcgttaaat 906
|||||||||||||||||||||
Sbjct: 4987 catttggtttatcctcgttaaat 5009
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6957
Number of Sequences: 1807
Number of extensions: 6957
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)