BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC45ZF05FM1.SCF screened BAC_end (959 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig971 511 e-145 >3x_Contig971 Length = 3245 Score = 511 bits (258), Expect = e-145 Identities = 282/286 (98%), Gaps = 3/286 (1%) Strand = Plus / Plus Query: 87 ttggcttggctggtgtccatttcaagaaagtttctggtaatacatggatgtataaggaat 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2963 ttggcttggctggtgtccatttcaagaaagtttctggtaatacatggatgtataaggaat 3022 Query: 147 tggctacacatattttgaaggaattaaatttatagattaaaactgtatacacactatgta 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3023 tggctacacatattttgaaggaattaaatttatagattaaaactgtatacacactatgta 3082 Query: 207 tgccataatcatttcctaatgcaagtctagtttataatgttacatgccacttttgtctca 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3083 tgccataatcatttcctaatgcaagtctagtttataatgttacatgccacttttgtctca 3142 Query: 267 ttatgtcattacatttttctctatgcaataactacgtgaggaaaccaaacgactattcta 326 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 3143 ttatgtcattacatttttctctatgcaataactacgtgagg-aaccaaacgactattcta 3201 Query: 327 agaaactcatttacaaagttgttcaagctcctcattcgccagtaaa 372 ||| |||||||||| |||||||||||||| |||||||||||||||| Sbjct: 3202 agacactcatttac-aagttgttcaagct-ctcattcgccagtaaa 3245 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7957 Number of Sequences: 1807 Number of extensions: 7957 Number of successful extensions: 57 Number of sequences better than 1.0e-20: 1 length of query: 959 length of database: 10,358,551 effective HSP length: 16 effective length of query: 943 effective length of database: 10,329,639 effective search space: 9740849577 effective search space used: 9740849577 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)