BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZF05FM1.SCF screened BAC_end
         (959 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig971                                                          511   e-145

>3x_Contig971 
          Length = 3245

 Score =  511 bits (258), Expect = e-145
 Identities = 282/286 (98%), Gaps = 3/286 (1%)
 Strand = Plus / Plus

                                                                        
Query: 87   ttggcttggctggtgtccatttcaagaaagtttctggtaatacatggatgtataaggaat 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2963 ttggcttggctggtgtccatttcaagaaagtttctggtaatacatggatgtataaggaat 3022

                                                                        
Query: 147  tggctacacatattttgaaggaattaaatttatagattaaaactgtatacacactatgta 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3023 tggctacacatattttgaaggaattaaatttatagattaaaactgtatacacactatgta 3082

                                                                        
Query: 207  tgccataatcatttcctaatgcaagtctagtttataatgttacatgccacttttgtctca 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3083 tgccataatcatttcctaatgcaagtctagtttataatgttacatgccacttttgtctca 3142

                                                                        
Query: 267  ttatgtcattacatttttctctatgcaataactacgtgaggaaaccaaacgactattcta 326
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3143 ttatgtcattacatttttctctatgcaataactacgtgagg-aaccaaacgactattcta 3201

                                                          
Query: 327  agaaactcatttacaaagttgttcaagctcctcattcgccagtaaa 372
            ||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 3202 agacactcatttac-aagttgttcaagct-ctcattcgccagtaaa 3245


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7957
Number of Sequences: 1807
Number of extensions: 7957
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)