BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF05RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig429 823 0.0
>3x_Contig429
Length = 1524
Score = 823 bits (415), Expect = 0.0
Identities = 564/603 (93%), Gaps = 10/603 (1%)
Strand = Plus / Minus
Query: 342 cttgtgtcatgttctacctttgctgttttcgtatacacggaggaaagaccattatccact 401
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1524 cttgtgtcatgttctacctntgctgttntcgtatacacggaggaaagaccattatccact 1465
Query: 402 gatctagtcttccctgcattaactcttttcaatttattgtcattccctcttgctgttgtt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 gatctagtcttccctgcattaactcttttcaatttattgtcattccctcttgctgttgtt 1405
Query: 462 cctaatgcaatctcttcatttattgaagcatctgtgtccataaatagactctttgcattt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 cctaatgcaatctcttcatttattgaagcatctgtgtccataaatagactctttgcattt 1345
Query: 522 ttgactaacgaagagttgcaaaatgatgccgttttacgtgaaccaaaagtaaagaatatt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 ttgactaacgaagagttgcaaaatgatgccgttttacgtgaaccaaaagtaaagaatatt 1285
Query: 582 ggtgacgaaggtgttaaagtcaacgatgcaactttcttantggcacgcanacctgaa-at 640
||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||
Sbjct: 1284 ggtgacgaaggtgttaaagtcaacgatgcaactttcttatggcaacgcaaacctgaatat 1225
Query: 641 ataagttgccttgaaaaacataaattntgntgccaagaaaggtgaactaacatgtatcgt 700
| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 1224 a-aagttgccttgaaaaacataaattttgttgccaagaaaggtgaactaacatgtatcgt 1166
Query: 701 ggggaaagtgggtagtggttagagtgcacttattcaaagtctactagggagaattgatta 760
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct: 1165 ggggaaagtgggtagtggtaagagtgcacttattcaaagtctacta-ggagatttgatta 1107
Query: 761 gagtgaagggggttcgcaactgttcacggntgacgtcgccaacgttttcacaggttccat 820
||||||| ||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 1106 gagtgaa-gggtttcgcaactgttcacgg-tgacgtcgccaacg-tttcacaggttccat 1050
Query: 821 ggnatatggatggtactggtanaagatattatttngtttgttccaaagtatgatcca-aa 879
|| |||| ||||||||| || |||||| ||| | ||||| || |||||||||||| ||
Sbjct: 1049 ggattatgaatggtactgtta-aagataatatcttgtttggtcacaagtatgatccagaa 991
Query: 880 atttaccagttgactataaaagactgtgctttgaagta-tgatctttttatgttgccgga 938
|||||||| |||||||||||| ||||||||| |||| |||||| | ||||||||| ||
Sbjct: 990 ttttaccagctgactataaaagcgtgtgctttg-agtattgatctctctatgttgccaga 932
Query: 939 tgg 941
|||
Sbjct: 931 tgg 929
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7679
Number of Sequences: 1807
Number of extensions: 7679
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)