BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF06FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1193 1168 0.0
>3x_Contig1193
Length = 4968
Score = 1168 bits (589), Expect = 0.0
Identities = 696/724 (96%), Gaps = 6/724 (0%)
Strand = Plus / Minus
Query: 88 gaggttttcctcttctgcagtagtatccacaataaagaagaaaattggtggaacttggac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 gaggttttcctcttctgcagtagtatccacaataaagaagaaaattggtggaacttggac 2744
Query: 148 aggaacactggtgatatattcaactgtagtattagtcaattccagtggtaaagtttcctg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aggaacactggtgatatattcaactgtagtattagtcaattccagtggtaaagtttcctg 2684
Query: 208 cgtcatattgttttattgttgaggaagaatgtttcttgtcttacaaataggacaagtcca 267
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2683 cgtcatattggcataatgttgaggaagaatgtttcttgtcttacaaataggacaagtcca 2624
Query: 268 ggtattggatctaacatcgatctcacagtaaggatttaacacagatttacagttgatgtt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2623 ggtattggatctaacatcgatctcacagtaaggatttaacacagatttacagttgatgtt 2564
Query: 328 accacataccacaggattatagccagcaacagcaagatcttcacgttccttcaaaggagt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 accacataccacaggattatagccagcaacagcaagatcttcacgttccttcaaaggagt 2504
Query: 388 gtataaacatccaactggaaccacattcttattagcgtcagttcttgacgctggaaacac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 gtataaacatccaactggaaccacattcttattagcgtcagttcttgacgctggaaacac 2444
Query: 448 gttccatgagaaacgaacaccgttaatatcttcgttttgttcgaaatccatggtgctaaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 gttccatgagaaacgaacaccgttaatatcttcgttttgttcgaaatccatggtgctaaa 2384
Query: 508 tctcttgattccaatctataagcagttggaaaagaatgtataaatcttctatgtggttca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 tctcttgattccaatctataagcagttggaaaagaatgtataaatcttctatgtggttca 2324
Query: 568 aacagatcanatccctagcactcaccttagcctgagcatttggac-tttacaggctactc 626
||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 2323 aacagatcaaatccctagcactcaccttagcctgagcaattggacttttacaggctactc 2264
Query: 627 tggttctctttttgttg-gttgataaatcctgtgtattgctagatatttttttcatccaa 685
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2263 tggttctctttttgttgtgttgataaatcctgtgtattgctagatatttttttcatcaaa 2204
Query: 686 acatttcttttaaggtcacgaaatgcccaattatgccaaaccaaaaatgaccc-cttagg 744
|||||||||| ||||||| ||||||| ||| |||| |||| ||||||||||| || |||
Sbjct: 2203 acatttctttcaaggtcagaaaatgccaaataatgcaaaacaaaaaatgacccactaagg 2144
Query: 745 gaaggcttgacttcagatctcttggcctcaatgct-taagaattatc-gttaaacccagt 802
||||||||| |||||||||| |||||| |||| |||| |||||| ||||||| ||||
Sbjct: 2143 aaaggcttgaactcagatctctgtgcctcagtgctgtaag-attatcggttaaacacagt 2085
Query: 803 attg 806
||||
Sbjct: 2084 attg 2081
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7456
Number of Sequences: 1807
Number of extensions: 7456
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)