BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF06RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1501 0.0
>3x_Contig1788
Length = 28493
Score = 1501 bits (757), Expect = 0.0
Identities = 841/864 (97%), Gaps = 5/864 (0%)
Strand = Plus / Minus
Query: 47 tagtgaaaaggtttaaaaacagtcaaatgtggtatcatttcaatcacaacaagaagctaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5834 tagtgaaaaggtttaaaaacagtcaaatgtggtatcatttcaatcacaacaagaagctaa 5775
Query: 107 cgataaagagtgcggccaggaatatccaacatctactatacggaaagagaatgttcccat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5774 cgataaagagtgcggccaggaatatccaacatctactatacggaaagagaatgttcccat 5715
Query: 167 attatgttcataccattattgctggattagatgaagaaggtaagggggccgtatactctt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5714 attatgttcataccattattgctggattagatgaagaaggtaagggggccgtatactctt 5655
Query: 227 tcgatccagtgggctcttatgaaagggaacagtgcagggcaggtggctctgcggcctcct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5654 tcgatccagtgggctcttatgaaagggaacagtgcagggcaggtggctctgcggcctcct 5595
Query: 287 taatcatgccatttttggataaccaagtgaatttaaagaaccagtatgagcctgattcta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5594 taatcatgccatttttggataaccaagtgaatttaaagaaccagtatgagcctgattcta 5535
Query: 347 atggtactaaacgcaaagaagttaaatacttaggtgtggaagaagttatcaaattagtaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5534 atggtactaaacgcaaagaagttaaatacttaggtgtggaagaagttatcaaattagtaa 5475
Query: 407 gagatgcgttcacatctgctactgagagacatatcaacgttggtgatggtctagagattt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5474 gagatgcgttcacatctgctactgagagacatatcaacgttggtgatggtctagagattt 5415
Query: 467 tgattgtcacaaaggatggtgtaagaaaagaatacttcgatttaaagagagattaagtta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5414 tgattgtcacaaaggatggtgtaagaaaagaatacttcgatttaaagagagattaagtta 5355
Query: 527 cactcaattttttttacgaaatctttttgataaagtttctgaatcttagtgtacaatata 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5354 cactcaattttttttacgaaatctttttgataaagtttctgaatcttagtgtacaatata 5295
Query: 587 tatatatatatagtaaaatataagatagtgttttattcgcttcgatcaatctgaagaaag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5294 tatatatatatagtaaaatataagatagtgttttattcgcttcgatcaatctgaagaaag 5235
Query: 647 cttccgaactgactgcaagtggagatgcanatcctgtcatctattgtggtaattctaaat 706
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5234 cttccgaactgactgcaagtggagatgcaaatcctgtcatctattgtggtaattctaaat 5175
Query: 707 ctccaccgagtttgataaccttctngatatagatgtagaagaaatcagagtacactanag 766
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 5174 ctccaccgagtttgataaccttctgataatagatgtagaagaaatcagagtacactaaag 5115
Query: 767 ttttgatcacacccgttgaaactgataatttatcgaatctttcttcggtat-atacctnc 825
||| |||||||| || ||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 5114 tttgaatcacaccggtgaaaactgataatttatcgaatctttcttcggtataatacctcc 5055
Query: 826 atatcc-cattggaatgtacaggccacggtataacccc-atgc-anaatataatgagatg 882
|||||| ||||||||||||| | |||||||||||||| |||| | ||||||||||||||
Sbjct: 5054 atatccaaattggaatgtacaaggcacggtataaccccaatgcaaaaatataatgagatg 4995
Query: 883 gcaa-tggtttgctttacctgttt 905
||| || ||||||||||||||||
Sbjct: 4994 tcaattgttttgctttacctgttt 4971
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,505
Number of Sequences: 1807
Number of extensions: 11505
Number of successful extensions: 1381
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)