BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF07RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig293 1558 0.0
>3x_Contig293
Length = 1065
Score = 1558 bits (786), Expect = 0.0
Identities = 831/840 (98%), Gaps = 5/840 (0%)
Strand = Plus / Minus
Query: 34 agcttttcca-tttccttttgttgacagctcttgtcatgataacgttttcaattgtgttg 92
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 agcttttccaatttccttttgttgacagctcttgtcatgataacgttttcaattgtgttg 978
Query: 93 tcacagtatagacggtatacaatgactggttttgtttggcctattctatgtgccctgtcc 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 tcacagtatagacggtatacaatgactggttttgtttggcctattctatgtgccctgtcc 918
Query: 153 atcgcttggagatcaacttgtgggttccagtcactgtcaaaaattatgacagaatctgca 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 atcgcttggagatcaacttgtgggttccagtcactgtcaaaaattatgacagaatctgca 858
Query: 213 gcagtaagattgataccgagacctgcagccctagtggatagtaggaatagattcgccttt 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gcagtaagattgataccgagacctgcagccctagtggatagtaggaatagattcgccttt 798
Query: 273 gatcccttcttgctgaactcttctatttgctctttacgagaattgttttgcatggacccg 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gatcccttcttgctgaactcttctatttgctctttacgagaattgttttgcatggacccg 738
Query: 333 tcaattctgcacgatatgaaattgtttaattcactccaatcttcgatcaaatcaagcatc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tcaattctgcacgatatgaaattgtttaattcactccaatcttcgatcaaatcaagcatc 678
Query: 393 gatacaaattgggaaaatatgagcaccttgtgtttcttcttgataagctcaggtaccaat 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gatacaaattgggaaaatatgagcaccttgtgtttcttcttgataagctcaggtaccaat 618
Query: 453 ttctgtaagacttgcaattttccagaagttttcaatagattctctaacgtaaggtctgtt 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttctgtaagacttgcaattttccagaagttttcaatagattctctaacgtaaggtctgtt 558
Query: 513 ggctccaagagggggaaataaaacaaataagtggagttcacgatttgccgtaattgaatc 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggctccaagagggggaaataaaacaaataagtggagttcacgatttgccgtaattgaatc 498
Query: 573 atcatattntgtaatctcttgttgagcaattctttgtgaatgtgcatgtcgtataacttt 632
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atcatattttgtaatctcttgttgagcaattctttgtgaatgtgcatgtcgtataacttt 438
Query: 633 tccatcttgccgatgttatcgttgggtatatcctgtgaatctgcacttaatttccattcg 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tccatcttgccgatgttatcgttgggtatatcctgtgaatctgcacttaatttccattcg 378
Query: 693 atgaaatctcttatacttttattgggaaccgtaccgatatattcagcatttaaggtgaaa 752
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 377 atgaaatctcttatacttttattggaaaccgtaccgatatattcagcatttaaggtgaaa 318
Query: 753 aagtccttgatagcctgcttttgaatggtctgttttaaattacccttcaaggcttgtttg 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aagtccttgatagcctgcttttgaatggtctgttttaaattacccttcaaggcttgtttg 258
Query: 813 taatatttctttctgtnagggggtcaccaggacaatgtgatgatattattctctctttgg 872
||||||||| |||||| | ||||||| |||||| ||||||||||| ||||||||||||||
Sbjct: 257 taatatttc-ttctgtaatggggtca-caggac-atgtgatgata-tattctctctttgg 202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7258
Number of Sequences: 1807
Number of extensions: 7258
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)