BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF08FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1458 1203 0.0
>3x_Contig1458
Length = 9817
Score = 1203 bits (607), Expect = 0.0
Identities = 702/727 (96%), Gaps = 6/727 (0%)
Strand = Plus / Plus
Query: 87 ctaacatttgacatataaaacccaaatactcattgccgttcttgtttgggtattatcctg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6412 ctaacatttgacatataaaacccaaatactcattgccgttcttgtttgggtattatcctg 6471
Query: 147 aaatatcacgaatgcgacttgttgtttcacattagcttaaccgatacgcacacagtttta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6472 aaatatcacgaatgcgacttgttgtttcacattagcttaaccgatacgcacacagtttta 6531
Query: 207 aatttttttatcaatgtttttattctggataaattgttgatgttcttgaagtgaaagcac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6532 aatttttttatcaatgtttttattctggataaattgttgatgttcttgaagtgaaagcac 6591
Query: 267 aatcagagggcttggacggtaatatttatgtgtaccatagtttcaacgagttggtagaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6592 aatcagagggcttggacggtaatatttatgtgtaccatagtttcaacgagttggtagaaa 6651
Query: 327 ctggaatgctgttatttttaaatttaagaacaaagatgttgtggaatcaagaatgttgtt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6652 ctggaatgctgttatttttaaatttaagaacaaagatgttgtggaatcaagaatgttgtt 6711
Query: 387 gccgtacgtaagcttttttttcttttctttactcttcttttttctatactattgttccat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6712 gccgtacgtaagcttttttttcttttctttactcttcttttttctatactattgttccat 6771
Query: 447 accgtttattcgaaacagttcttgtgacatatattccatcactctcaattaacgattctt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6772 accgtttattcgaaacagttcttgtgacatatattccatcactctcaattaacgattctt 6831
Query: 507 gatcgaaattgtctacattctgagcagtaatattcgttgctggcaatttgatattagtgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6832 gatcgaaattgtctacattctgagcagtaatattcgttgctggcaatttgataatagtgt 6891
Query: 567 caacgcagaaacactggnaacannttagaagtaagggggaaaacgaacatgaccaaaaac 626
||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||
Sbjct: 6892 caacgcagaaacactggaaacaatttagaagtaa-ggggaaaacgaacatgaccaaaaac 6950
Query: 627 acttgcaggttangccatggattcgga-cagccaagcacccagtttgccaaccattctgc 685
|||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 6951 acttgcaggttaggccatgga-tcggaccagccaagcacccagttggccaaccattctgc 7009
Query: 686 gacatttttcgaaaattagaagttttatgaaacaaacacccctttcattgaagcttagct 745
|||| ||||||||| ||||||| ||| |||||||||| |||||||||||||||| ||||
Sbjct: 7010 gaca-ttttcgaaatatagaagtatta-gaaacaaaca-ccctttcattgaagctaagct 7066
Query: 746 tacgatgaaaacggtcaactgttttcaaaatgctgtaaacaacggtttacgttttgcttt 805
||||||||||| ||||||||||| ||||||||| ||||||||||| |||||| ||| |
Sbjct: 7067 aacgatgaaaaccgtcaactgtttcaaaaatgctgaaaacaacggttcacgtttcgctgt 7126
Query: 806 ggaagaa 812
||||||
Sbjct: 7127 agaagaa 7133
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9384
Number of Sequences: 1807
Number of extensions: 9384
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)