BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF08RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1351 1572 0.0
>3x_Contig1351
Length = 9242
Score = 1572 bits (793), Expect = 0.0
Identities = 886/908 (97%), Gaps = 7/908 (0%)
Strand = Plus / Minus
Query: 47 aagggaagacacccatggaggagttagaaagactttcagctgctagagtacccaaaaaga 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8942 aagggaagacacccatggaggagttagaaagactttcagctgctagagtacccaaaaaga 8883
Query: 107 aagatttcatggacccaatcgaatcaatgttgcaggcaaagaaaaatatcgaaactgaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8882 aagatttcatggacccaatcgaatcaatgttgcaggcaaagaaaaatatcgaaactgaag 8823
Query: 167 ttgtaaatgaagctggtgattcaagacctacaatacctatattattggagaagattaaac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8822 ttgtaaatgaagctggtgattcaagacctacaatacctatattattggagaagattaaac 8763
Query: 227 attctagcatctataacgatcaaattaccaattcgtatatcataccagagagaatagcga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8762 attctagcatctataacgatcaaattaccaattcgtatatcataccagagagaatagcga 8703
Query: 287 aatatggtgaattagaatttgcactctctccggaagtttatcaggcgcttgagtataaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8702 aatatggtgaattagaatttgcactctctccggaagtttatcaggcgcttgagtataaag 8643
Query: 347 acttctattctcaccaagctgcagcaataaactgcattcataagggagagaatgtcataa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8642 acttctattctcaccaagctgcagcaataaactgcattcataagggagagaatgtcataa 8583
Query: 407 tcacaacgtctacttcgtcgggaaaatctttaatctaccagttatctgcaatagacgcac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8582 tcacaacgtctacttcgtcgggaaaatctttaatctaccagttatctgcaatagacgcac 8523
Query: 467 tactcaaggatccacactctacgttcatgtacatatttccgacaaaagctttagcacaag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8522 tactcaaggatccacactctacgttcatgtacatatttccgacaaaagctttagcacaag 8463
Query: 527 atcaaaagagatcatttcaaaagctattgtccaagataccagaattgtcacatgttattg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8462 atcaaaagagatcatttcaaaagctattgtccaagataccagaattgtcacatgttattg 8403
Query: 587 tagatacctatgatggagacacagagcaacaagcacgagcaggtattcggatttcggctc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402 tagatacctatgatggagacacagagcaacaagcacgagcaggtattcggatttcggctc 8343
Query: 647 gtgttattttcacgaatcctgatatgattcacacaagtattttacctaatcatcctaact 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8342 gtgttattttcacgaatcctgatatgattcacacaagtattttacctaatcatcctaact 8283
Query: 707 ggaaaatgtttttggacaatctaagatatngtggtcggtgatgaaatgcatatttataag 766
||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 8282 ggaaaatgtttttggacaatctaagatat-gtggtcgttgatgaattgcatatttataag 8224
Query: 767 ggctttnttcgtttccatgtggcttttattattagaaga-tattccgaa-tgtgaagggg 824
|||||| | ||| |||||||||||| |||| |||||| || |||||| ||||||||||
Sbjct: 8223 ggctttttcggttcccatgtggctttagttatgagaagattagtccgaattgtgaagggg 8164
Query: 825 ttttataaaaatgaaaagcttcaa-ttaaatcatgttctgcttacact-aaacatcccat 882
|||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||
Sbjct: 8163 ttttataaaaatgaaaagcttcaatttatatcatgttctgc-tacactaaaacatcccat 8105
Query: 883 ac-acatatgcaaaacattttcggtattgagcaagtcactttgattaacaaaaatggttc 941
|| |||||||||| ||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct: 8104 acaacatatgcaagacattttcggtattgagcaagtcacgttgattaacgaagatggttc 8045
Query: 942 gccaagag 949
||||||||
Sbjct: 8044 gccaagag 8037
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7066
Number of Sequences: 1807
Number of extensions: 7066
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)