BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF09FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 959 0.0
>3x_Contig1794
Length = 36744
Score = 959 bits (484), Expect = 0.0
Identities = 589/615 (95%), Gaps = 7/615 (1%)
Strand = Plus / Plus
Query: 86 ttcgtttggttgtgcaaaacggttgaaagactttaccatcactttcgacttcggttcttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29968 ttcgtttggttgtgcaaaacggttgaaagactttaccatcactttcgacttcggttcttt 30027
Query: 146 tacaggtttagcatctttcgttgccgcctttggtttagcggctttatcaaatccgagttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30028 tacaggtttagcatctttcgttgccgcctttggtttagcggctttatcaaatccgagttt 30087
Query: 206 cttcgggagcggttttttgtcttcctttggtccttccctagacttctgctctgctcgctt 265
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30088 cttcgggagcggcttcttgtcttcctttggtccttccctagacttctgctctgctcgctt 30147
Query: 266 cattaattcatcaaacgatagtttcttgattggctcccttttcggtaccacgacaggata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30148 cattaattcatcaaacgatagtttcttgattggctcccttttcggtaccacgacaggata 30207
Query: 326 ctttccgcttgtggtattgacaccaggttttttcttataaattggagcctcatccttcgg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 30208 ctttccgcttgtggtattgacaccaggttttttcttataaattggagcctcat-cttcgg 30266
Query: 386 cgatgacgctttatgcctggccttagcagcaggtttagtcgatgtggatgatataccttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30267 cgatgacgctttatgcctggccttagcagcaggtttagtcgatgtggatgatataccttg 30326
Query: 446 cttcaacctacgcgcttcctttaatctttgaatagccgggtcaacttcacgaacgtaatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30327 cttcaacctacgcgcttcctttaatctttgaatagccgggtcaacttcacgaacgtaatc 30386
Query: 506 cttgggaagtagtttttctttcgattgaagagatttagcttttattttgttttgcggaat 565
|||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||
Sbjct: 30387 cttgggaagtagtttttcttcagattgaagagatttagc-tttattttggtttgcggaat 30445
Query: 566 gattcggntcattaattcttagtggtcttgcttcacctgttggaactttagccaaaaagc 625
||||||| ||||||| ||||||||||| ||||||| ||| || ||| |||||||| ||||
Sbjct: 30446 gattcggttcattaa-tcttagtggtc-tgcttcaactgctgtaac-ttagccaagaagc 30502
Query: 626 tcattatttttgctttatttttggagagagcaggagtactgggtagatgaaaattcgatt 685
|||||| ||||||| ||| |||| |||||||||||||||| ||||||| || ||||||
Sbjct: 30503 tcatta-ttttgctatatctttgaagagagcaggagtact-ggtagatagaatatcgatt 30560
Query: 686 aatgtttacttactg 700
||||| |||| ||||
Sbjct: 30561 aatgtatactcactg 30575
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6739
Number of Sequences: 1807
Number of extensions: 6739
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)