BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZF09RM1.SCF screened BAC_end
         (948 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1588                                                         912   0.0  

>3x_Contig1588 
          Length = 14692

 Score =  912 bits (460), Expect = 0.0
 Identities = 579/608 (95%), Gaps = 8/608 (1%)
 Strand = Plus / Minus

                                                                         
Query: 194   cttcttcaccaggtaagaggaatatgtagagattcaccttcgcaaccagcacgagcagta 253
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14589 cttcttcaccaggtaagaggaata-gtagagattcaccttcgcaaccagcacgagcagta 14531

                                                                         
Query: 254   cgcccgattctgtgtaaatggtcttctactgcaaacggtggatccatttctataacagta 313
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14530 cgcccgattctgtgtaaatggtcttctactgcaaacggtggatccatttctataacagta 14471

                                                                         
Query: 314   ctcacatggggtaaatcaagacctctggatgcaacatcggtacaaaataagatcagatgc 373
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14470 ctcacatggggtaaatcaagacctctggatgcaacatcggtacaaaataagatcagatgc 14411

                                                                         
Query: 374   ttacccttggtggcatcgttattcgtggcgaagtgttttaaggttgcggttcttgtttgt 433
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14410 ttacccttggtggcatcgttattcgtggcgaagtgttttaaggttgcggttcttgtttgt 14351

                                                                         
Query: 434   tgcgataaggacccatgcaacttgtaacatatgacgtttggatcgtccgtgtcgttgaaa 493
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14350 tgcgataaggacccatgcaacttgtaacatatgacgtttggatcgtccgtgtcgttgaaa 14291

                                                                         
Query: 494   catggaagtatgctgctcccctttgtgagaagccttgcggtatctccaacgaggacctct 553
             ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 14290 catggaagtatgctgttcccctttgtgagaagccttgcggtatctccaacga-gacctct 14232

                                                                         
Query: 554   atgattcccatcatgcgatgaaaacacttcgtagtggaaatctacactatcagcatcaga 613
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||
Sbjct: 14231 atgattcccatcatgcgatgaaaacacttcgtagtggaaatctacactatcagaacaaga 14172

                                                                         
Query: 614   tataaacacgatggttcttgttacgtctgattttgatccttctatataatgcttttgagt 673
             || |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 14171 taaaaacacaatggttcttgttacgtctgattttgatccttctttataatgcttttgagt 14112

                                                                         
Query: 674   tatagttgaaaaagatgcgggtcgagt-acttgcctttagctttggtggcactattgac- 731
             ||||||||  |||||| | | | |||| ||| ||| |||||||||||||||||| |||| 
Sbjct: 14111 tatagttgtcaaagatcccgctagagtaactagcc-ttagctttggtggcacta-tgaca 14054

                                                                         
Query: 732   atcttttgaaggaattgatctggaactgctggaagtttccg-tggtttttgaccactgtc 790
             ||||||||||| ||||||||||| |||| | | |||||||| | ||||||||||||||  
Sbjct: 14053 atcttttgaagtaattgatctggtactg-tagtagtttccgtttgtttttgaccactgct 13995

                     
Query: 791   aatcaatt 798
             ||||||||
Sbjct: 13994 aatcaatt 13987


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6707
Number of Sequences: 1807
Number of extensions: 6707
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)