BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF10RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 1463 0.0
>3x_Contig1173
Length = 7454
Score = 1463 bits (738), Expect = 0.0
Identities = 782/794 (98%), Gaps = 3/794 (0%)
Strand = Plus / Minus
Query: 48 gaatgccagtaaaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3937 gaatgccagtaaaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatg 3878
Query: 108 tcacaattttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3877 tcacaattttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttg 3818
Query: 168 tccagggacaatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3817 tccagggacaatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttat 3758
Query: 228 ggtgctttctcacattcagatatgattggaaaaccatttggttctcaaattgctattaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3757 ggtgctttctcacattcagatatgattggaaaaccatttggttctcaaattgctattaga 3698
Query: 288 acgaagggaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3697 acgaagggaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatgg 3638
Query: 348 tctatctctttacctcacagaacccagattgtttatacaccagattcctcctatatcatg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3637 tctatctctttacctcacagaacccagattgtttatacaccagattcctcctatatcatg 3578
Query: 408 cagcggatggagtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttcc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3577 cagcggatggagtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttcc 3518
Query: 468 ttttctcatgcgtttgccagatctgcaggtcatttattctcatatgagttccacgaagta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3517 ttttctcatgcgtttgccagatctgcaggtcatttattctcatatgagttccacgaagta 3458
Query: 528 agatacgaacaagcgaagcaggaatttaaagaacatggactattggaagctggaaacact 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3457 agatacgaacaagcgaagcaggaatttaaagaacatggactattggaagctggaaacact 3398
Query: 588 accataacgcatagagatgtttgtaaagatggatttgaaattaaaaacggtgacaccaca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3397 accataacgcatagagatgtttgtaaagatggatttgaaattaaaaacggtgacaccaca 3338
Query: 648 tcgcatgaattcagaggtccagaggaaacgaaagtggagttgaatgctgactgcatattn 707
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3337 tcgcatgaattcagaggtccagaggaaacgaaggtggagttgaatgctgactgcatattt 3278
Query: 708 ttagatcttccagcaccatgggatgccatacccaatttgactttcgttatctcaaagg-a 766
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 3277 ttagatcttccagcaccatgggatgccatacccaatttgacttccgttatctcaaaggaa 3218
Query: 767 aagaaagtanatctctgctgctt-ttcccatgcatcgaacaagtggataagacc-tanna 824
||||| ||| ||||||||||||| | |||||||||||||||||||||||||||| || |
Sbjct: 3217 aagaaggtaaatctctgctgcttctccccatgcatcgaacaagtggataagaccttagaa 3158
Query: 825 acgctagaagagga 838
|||||||||||||
Sbjct: 3157 gcgctagaagagga 3144
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5628
Number of Sequences: 1807
Number of extensions: 5628
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)