BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF12FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig859 971 0.0
>3x_Contig859
Length = 2084
Score = 971 bits (490), Expect = 0.0
Identities = 558/578 (96%), Gaps = 2/578 (0%)
Strand = Plus / Minus
Query: 85 ttccacaaaaggaaaggtaggtacgtgcgaaatgatctgaggcatcaccacaacaaacca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 ttccacaaaaggaaaggtaggtacgtgcgaaatgatctgaggcatcaccacaacaaacca 1520
Query: 145 ggtattttactagcagccggctgtttctggtgcgcccttgtgcctcatgtcatttatgaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1519 ggtattttactagcagccggctgtttctggtgcgcccttgtgcctcatgtcatttatgaa 1460
Query: 205 ggtaataataactaatagcaatatgttgttgattagatatctttttttttttcgtaaatt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1459 ggtaataataactaatagcaatatgttgttgattagatatctttttttttttcgtaaatt 1400
Query: 265 gataggcgtatatatctctatgttttgttacatttgactaattaatgttcagaggctttg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 gataggcgtatatatctctatgttttgttacatttgactaattaatgttcagaggctttg 1340
Query: 325 attttgtcgtacatcgccaggagtttggaagatgggacatctcttggccagtaatatgca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1339 attttgtcgtacatcgccaggagtttggaagatgggacatctcttggccagtaatatgca 1280
Query: 385 gtgaaagaccataaatgtcttttatatttttctggagaggtcttagacgagtccttcttg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 gtgaaagaccataaatgtcttttatatttttctggagaggtcttagacgagtccttcttg 1220
Query: 445 tgcgattcgatgtagtcaccaacacgtttcaatcccttcttcaatagtttagcccattgc 504
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 1219 tgcgattcgatgtagtcaccaacacgtttcaattccttcttcaataggttagcccattgc 1160
Query: 505 ttacgtttcagaccgtctccttcagatcttagacgtttgattgagctacggacgtttgtc 564
||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 1159 ttacgttcaagaccgtctcctccagatcttagacgtttgagtgagctacggacgtttgtc 1100
Query: 565 attgtttttttacactttttttcgtccatactgtcggattttttgtcaggaaaacgg-tt 623
|| ||||| ||||||| || |||||||||||||||| ||| ||||||||||| |||| |
Sbjct: 1099 atcgttttcttacactcttcttcgtccatactgtcgtattctttgtcaggaagacggata 1040
Query: 624 ttggtttttggtgcccacggtatgttcttaacctttcc 661
| || |||||||||| |||||||| |||| ||||||||
Sbjct: 1039 tcggcttttggtgccaacggtatg-tctttacctttcc 1003
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,690
Number of Sequences: 1807
Number of extensions: 13690
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)