BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZF12RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig534 1166 0.0
>3x_Contig534
Length = 2494
Score = 1166 bits (588), Expect = 0.0
Identities = 705/731 (96%), Gaps = 10/731 (1%)
Strand = Plus / Minus
Query: 46 gcttcaaagaaacggaaactctctgtatcggatgccgaggaagaagctggcaacgattcg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 gcttcaaagaaacggaaactctctgtatcggatgccgaggaagaagctggcaacgattcg 1306
Query: 106 acctaacctcaggataacccctgttgcttatttccaatatcaaatgttcgaattaagtca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1305 acctaacctcaggataacccctgttgcttatttccaatatcaaatgttcgaattaagtca 1246
Query: 166 tgatgatatacatataattaaagcgtcgcagaatccgtatgtatattacatatagacgat 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 tgatgatatacatataattaaagcgtcgcagaatccgtatgtatattacatatagacgag 1186
Query: 226 acatatatatagtcttttaacacttcatctgggaaaccagagtaaaagtcgctttatttt 285
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 acagatatatagtcttttaacacttcatctgggaaaccagagtaaaagtcgctttatttt 1126
Query: 286 taggttgtttttttcttggctggaaatgaatatagtgttgtttgtagttgttaaaatttc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 taggttgtttttttcttggctggaaatgaatatagtgttgtttgtagttgttaaaatttc 1066
Query: 346 gttcgtatgttactgaatatgcttttaaaattgatacggtcggcctctcaatcaattcca 405
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1065 gttcgtatgttactgaatatgcttttaaaattgatacggtcggcctgtcaatcaattcca 1006
Query: 406 tttttagtggtgagtagagtagttacggtaaccaacaacctttcttctaccgataatttc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 tttttagtggtgagtagagtagttacggtaaccaacaacctttcttctaccgataatttc 946
Query: 466 acccaatgagtataaacctaacaattgcacgccgaaagcaccgatcttaacggcttggtc 525
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 acccaatgagtataaacctgacaattgcacgccgaaagcaccgatcttaacggcttggtc 886
Query: 526 cttttcaatgttcttcaac-agttaacaacttgttgaggcttatcagcataacccanagc 584
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 885 cttttcaatgttcttcaacaagttaacaacttgttgaggcttatcagcataacccaaagc 826
Query: 585 ttgtctgtacaatctggtgtagaccattttaaagtccgagaagtttggtggctgtagacc 644
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 825 ttgtctgtacaatctggtgtagaccatttcaaagtccgagaagtttggtggctgtagacc 766
Query: 645 tttcttagtgtagacctgctttggat-attcagc-gtaaactataccgta-taaacggtn 701
|| |||||||||||||||| |||||| ||||||| |||| || ||||||| ||||||||
Sbjct: 765 ttccttagtgtagacctgc-ttggataattcagcagtaacct-taccgtagtaaacggt- 709
Query: 702 cttgttcaacatggattgggtccttgtgggtccaaagaagaacctaaggattggacttct 761
|||| |||||| ||||| || |||||| || |||||||||| |||| |||||||| |||
Sbjct: 708 cttggtcaacagtgattgtgt-cttgtgtgt-caaagaagaaactaaagattggac-tct 652
Query: 762 gaaaatcattg 772
| |||||||||
Sbjct: 651 ggaaatcattg 641
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8018
Number of Sequences: 1807
Number of extensions: 8018
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)