BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG01RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1588 1296 0.0
>3x_Contig1588
Length = 14692
Score = 1296 bits (654), Expect = 0.0
Identities = 696/708 (98%), Gaps = 2/708 (0%)
Strand = Plus / Minus
Query: 193 cttcttcaccaggtaagaggaatagtagagattcaccttcgcaaccagcacgagcagtac 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14589 cttcttcaccaggtaagaggaatagtagagattcaccttcgcaaccagcacgagcagtac 14530
Query: 253 gcccgattctgtgtaaatggtcttctactgcaaacggtggatccatttctataacagtac 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14529 gcccgattctgtgtaaatggtcttctactgcaaacggtggatccatttctataacagtac 14470
Query: 313 tcacatggggtaaatcaagacctctggatgcaacatcggtacaaaataagatcagatgct 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14469 tcacatggggtaaatcaagacctctggatgcaacatcggtacaaaataagatcagatgct 14410
Query: 373 tacccttggtggcatcgttattcgtggcgaagtgttttaaggttgcggttcttgtttgtt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14409 tacccttggtggcatcgttattcgtggcgaagtgttttaaggttgcggttcttgtttgtt 14350
Query: 433 gcgataaggacccatgcaacttgtaacatatgacgtttggatcgtccgtgtcgttgaaac 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14349 gcgataaggacccatgcaacttgtaacatatgacgtttggatcgtccgtgtcgttgaaac 14290
Query: 493 atggaagtatgctgttcccctttgtgagaagccttgcggtatctccaacgagacctctat 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14289 atggaagtatgctgttcccctttgtgagaagccttgcggtatctccaacgagacctctat 14230
Query: 553 gattcccatcatgcgatgaaaacacttcgtagtggaaatctacactatcagaacaagata 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14229 gattcccatcatgcgatgaaaacacttcgtagtggaaatctacactatcagaacaagata 14170
Query: 613 aaaacacaatggttcttgttacgtctgattntgatccttctttataatgcttttgagtta 672
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 14169 aaaacacaatggttcttgttacgtctgattttgatccttctttataatgcttttgagtta 14110
Query: 673 tagttgtcaaagatcccgctagagtaactagccttagctttggtggcactatgacaatct 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14109 tagttgtcaaagatcccgctagagtaactagccttagctttggtggcactatgacaatct 14050
Query: 733 tttngagtaattgatctggtactgtagtagttttccgtttggttttgaccactgctaatc 792
||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 14049 tttgaagtaattgatctggtactgtagtag-tttccgtttgtttttgaccactgctaatc 13991
Query: 793 aatttgtagtttttgagcgttacattgccaatttttgtcacgttacctttcacagtagca 852
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13990 aatttgtagttttgaagcgttacattgccaagttttgtcacgttacctttcacagtagca 13931
Query: 853 ctacacaagacgtgt-aaattctcttttggcacttggggaattgatga 899
||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct: 13930 ctacacaagacgtgtaaaattctctttggcaacttggggaattgatga 13883
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5467
Number of Sequences: 1807
Number of extensions: 5467
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)