BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG02FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1457 950 0.0
>3x_Contig1457
Length = 7441
Score = 950 bits (479), Expect = 0.0
Identities = 636/670 (94%), Gaps = 15/670 (2%)
Strand = Plus / Plus
Query: 88 gtctgtaggtttgagtggatagcacggatgaaataatgcaaatggtaaaattatcactcc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1753 gtctgtaggtttgagtggatagcacggatgaaataatgcaaatggtaaaattatcactcc 1812
Query: 148 tgaagaatcagggtcttgagtctgacaactctccattttgaagtacattactctgtccag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1813 tgaagaatcagggtcttgagtctgacaactctccattttgaagtacattactctgtccag 1872
Query: 208 acgcatcatgacaatcccccagaataagacgcagtacatacttatcagactttatcccca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1873 acgcatcatgacaatcccccagaataagacgcagtacatacttatcagactttatcccca 1932
Query: 268 agcaaaggccagtttatgccccacgtacacgtgacttcattctttcgaactaatttaccc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933 agcaaaggccagtttatgccccacgtacacgtgacttcattctttcgaactaatttaccc 1992
Query: 328 ggttatcttctgtcactatcaacgaatagcgaactacattcagttcatgaaaaactcaga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1993 ggttatcttctgtcactatcaacgaatagcgaactacattcagttcatgaaaaactcaga 2052
Query: 388 gaatctcgaaaaagctaacagcgcatcatgaaagtcttgatctaatagttgttatattca 447
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 gaatctcg-aaaagctaacagcgcatcatgaaagtcttgatctaatagttgttatattca 2111
Query: 448 tatatggggtgaatgtaggggtttaaattgtccaatagccttgtttattccattcagtga 507
||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 2112 tatat-gggtgaatgtaggg--tttaattgtccaatagccttgtttattccattcagtga 2168
Query: 508 gctttgaaagttacaaattttaatacaac-atggattgcttggtttccaggtggtcaaag 566
||||||||||| |||||| | |||||||| |||||| ||| || ||||||||||||||||
Sbjct: 2169 gctttgaaagtaacaaatataaatacaacaatggatagctcgg-ttccaggtggtcaaag 2227
Query: 567 aactcttaaaaagagaagaaatgcctcattgccaaaagaaaagatggcttaaccaaacac 626
||||||| |||||||||||||||| ||||| ||| ||||||| ||| |||||||||||
Sbjct: 2228 aactcttcaaaagagaagaaatgctcaattgcaaaaggaaaagaaggc-taaccaaacac 2286
Query: 627 cagctttttccaagacaggcttggatttggtgggttcttccaagctcttttttgtagcct 686
|||| || |||||||||||| |||||||||| ||||||||| |||||| ||||| || ||
Sbjct: 2287 cagc-ttctccaagacaggc-tggatttggt-ggttcttcc-agctctattttgaag-ct 2341
Query: 687 ttacacagatgaaaccaatgggtttgagagttgacccctttgggggttttggttcttggc 746
||||||||||||| |||||||| ||||||||||| ||| |||| |||||| |||||||||
Sbjct: 2342 ttacacagatgaagccaatggg-ttgagagttga-cccattggtggtttt-gttcttggc 2398
Query: 747 tgttgcattt 756
||||||||||
Sbjct: 2399 tgttgcattt 2408
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,423
Number of Sequences: 1807
Number of extensions: 13423
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)