BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG02RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1757 1641 0.0
>3x_Contig1757
Length = 24754
Score = 1641 bits (828), Expect = 0.0
Identities = 862/875 (98%)
Strand = Plus / Plus
Query: 49 aaaggcagattactctattttcattacccggacttgcccaccctgatatcccgtgcttca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18238 aaaggcagattactctattttcattacccggacttgcccaccctgatatcccgtgcttca 18297
Query: 109 agtacatttccttccccatgaatggctctcgaccgatatctcgacgaggaaattgtaagt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18298 agtacatttccttccccatgaatggctctcgaccgatatctcgacgaggaaattgtaagt 18357
Query: 169 gaaaaaaaaataataaaaaaaaaaaaacttctcacagctcaatatatacagcttgtcttg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18358 gaaaaaaaaataataaaaaaaaaaaaacttctcacagctcaatatatacagcttgtcttg 18417
Query: 229 aacttctttaactattgacttctttaccttcttcaacttctgtttacattcccactattt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18418 aacttctttaactattgacttctttaccttcttcaacttctgtttacattcccactattt 18477
Query: 289 gtctaatttattttatacaatttaactttgattcttacccataattgctgtttctctgtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18478 gtctaatttattttatacaatttaactttgattcttacccataattgctgtttctctgtg 18537
Query: 349 tttgctgaatcattacttgactgtactaaggattaaacatcgtgggttacacatttgaac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18538 tttgctgaatcattacttgactgtactaaggattaaacatcgtgggttacacatttgaac 18597
Query: 409 atatttatacacatcatacacaatgcatatgagagctgctacaaggaataacgtaacgaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18598 atatttatacacatcatacacaatgcatatgagagctgctacaaggaataacgtaacgaa 18657
Query: 469 caggttgttcatgactacttttctggtcgcattttcgagcgtggcattgagttcggcgtt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18658 caggttgttcatgactacttttctggtcgcattttcgagcgtggcattgagttcggcgtt 18717
Query: 529 gccatgtcctagccatacactagattctgattctccagttcttgagcagaaggatgcaca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18718 gccatgtcctagccatacactagattctgattctccagttcttgagcagaaggatgcaca 18777
Query: 589 gctacaggcgcagaaacagaaacaaacatctcaagataattaatggactggaagctcaca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18778 gctacaggcgcagaaacagaaacaaacatctcaagataattaatggactggaagctcaca 18837
Query: 649 gggggccatacttccggtaaatcaatcagattgttcacttcatccctcattattctcctc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18838 gggggccatacttccggtaaatcaatcagattgttcacttcatccctcattattctcctc 18897
Query: 709 tttttttttttctactgacgatacatgttggaacgctgttcttattggtaggatagagcc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18898 tttttttttttctactgacgatacatgttggaacgctgttcttattggtaggatagagcc 18957
Query: 769 tatctgagagtgcagagtttttttatgaaagcttaagacataatatatatatgactgcca 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18958 tatctgagagtgcagagtttttttatgaaagcttaagacataatatatatatgactgcca 19017
Query: 829 gctgccaacacgaccagagaaaaaagagccctncaaatatgtttnaacttaattatatta 888
|||||||||||||||||||||||||||||||| || ||||||| |||||| | |||||
Sbjct: 19018 gctgccaacacgaccagagaaaaaagagccctcaaattatgttttaacttattattatta 19077
Query: 889 tnanntatatcattatcattatatccattcattcc 923
| | ||||||||||||||||| ||||||||||
Sbjct: 19078 ttattattatcattatcattatattcattcattcc 19112
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,682
Number of Sequences: 1807
Number of extensions: 20682
Number of successful extensions: 1462
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)