BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG03FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1727 1057 0.0
>3x_Contig1727
Length = 17872
Score = 1057 bits (533), Expect = 0.0
Identities = 632/656 (96%), Gaps = 8/656 (1%)
Strand = Plus / Minus
Query: 90 acacccttcgtgctgtttgaagtaggtctatgtgaatcatgatgcaagaaacttgaatgg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 acacccttcgtgctgtttgaagtaggtctatgtgaatcatgatgcaagaaacttgaatgg 656
Query: 150 tttcgtctaggtgtggttggaggttccgagtttaagttctgataagtttgctcttcgtct 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tttcgtctaggtgtggttggaggttccgagtttaagttctgataagtttgctcttcgtct 596
Query: 210 tcatcagtatcttcaccatctctatgcccgctaggaggtgtcgtaggtctttccaaagat 269
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcatcagtatcgccaccatctctatgcccgctaggaggtgtcgtaggtctttccaaagat 536
Query: 270 tcagagtattgaattctagatatcgtatcaccactattagaatcagtgtttagaagttcc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcagagtattgaattctagatatcgtatcaccactattagaatcagtgtttagaagttcc 476
Query: 330 ccgaataattcgttcttcaatacgatatcaaaagtctgatgagcctgacgttccctttcc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccgaataattcgttcttcaatacgatatcaaaagtctgatgagcctgacgttccctttcc 416
Query: 390 cattccaaacggttatctgacccattagaaggcttgaaagccggtatacttgggtttgac 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cattccaaacggttatctgacccattagaaggcttgaaagccggtatacttgggtttgac 356
Query: 450 ctgattgaactgacggtattcaaatccatttccgtcctattanggtatgaatctgtcagc 509
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 355 ctgattgaactgacggtattcaaatccatttccgtcctatta-ggtatgaatctgtcagc 297
Query: 510 aaatccagaaccagctgaagaagtggacctgggtcgtcttactggagaaagcagtagcga 569
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 296 aaatccagaaccagctgaagaagtggacctgggtcgtcttactggagaagcaagtagcga 237
Query: 570 agagctggacgaagagttagacatatttgtagtagcagaagatgtgggtcgtttgttgat 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 agagctggacgaagagttagacatatttgtagtagcagaagatgtgggtcgtttgttgat 177
Query: 630 tcgttcttccggggacctgagaccttttcaca-gaaaagagaacggtggtttattc-caa 687
||| ||||||||||||||||||||||||| || ||||| ||||||| |||||| |||
Sbjct: 176 gcgt--ctccggggacctgagaccttttcacaggagaagaggacggtgggttattcacaa 119
Query: 688 atggggttctgcatttttggtttttgcccctggtttcccttttgaaaaattccaat 743
|| || |||||||| | || | |||| |||||||||||| ||||||| ||||||||
Sbjct: 118 at-ggcttctgcatctctgctatttg-ccctggtttccc-tttgaaatattccaat 66
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8706
Number of Sequences: 1807
Number of extensions: 8706
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)