BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG04FM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1054 934 0.0
>3x_Contig1054
Length = 4453
Score = 934 bits (471), Expect = 0.0
Identities = 539/554 (97%), Gaps = 7/554 (1%)
Strand = Plus / Minus
Query: 86 atcagaggatttgtaccaaatcctaggcacggaaaacttgcgcaaatgtgggaattcaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 atcagaggatttgtaccaaatcctaggcacggaaaacttgcgcaaatgtgggaattcaag 1079
Query: 146 tgggtacattttcctcatttttctctggtacctatggatagcagcttgtaaatttactct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 tgggtacattttcctcatttttctctggtacctatggatagcagcttgtaaatttactct 1019
Query: 206 gaacttgaatagtgattgtcgttgacggggccattgcgtctccttgtagctatcgaatct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 gaacttgaatagtgattgtcgttgacggggccattgcgtctccttgtagctatcgaatct 959
Query: 266 ctgtttagttagcgagtagaaagcagtgatccggtcttctgctgtttccttcgcattctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 ctgtttagttagcgagtagaaagcagtgatccggtcttctgctgtttccttcgcattctt 899
Query: 326 cgtccattccttaacgctttcgaagttttcacgcctcaccgttgtactgacccagttaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 cgtccattccttaacgctttcgaagttttcacgcctcaccgttgtactgacccagttaga 839
Query: 386 agttgctgcataagtaaatttcaacttcttctgacatacttcgtaatattgctcaagaga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 agttgctgcataagtaaatttcaacttcttctgacatacttcgtaatattgctcaagaga 779
Query: 446 aaggaagctagggtaatatgatgctaaagtggatggaagtggcgttttctt-acgtatgc 504
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 778 agggaagctagggtaatatgatgctaaagtggatggaagtggcgttttcttcacgtatgc 719
Query: 505 tgcttcgtatgcatgggccctatgg-ccatgtatgcat-aaattgacaggcc-atctttc 561
||||||||||||||||||||||||| |||||||||||| ||||||||| ||| |||| ||
Sbjct: 718 tgcttcgtatgcatgggccctatggcccatgtatgcatcaaattgacaagccaatctgtc 659
Query: 562 ctttgaagctagtgaactacactctacctcgt--gttttaataaaactgtt-atatcacg 618
||| ||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||
Sbjct: 658 cttgaaagctagtgaactacactctaactcgttgtttttagtaaaactgttaatatcacg 599
Query: 619 gatgaaaacggtca 632
||||||||||||||
Sbjct: 598 gatgaaaacggtca 585
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,476
Number of Sequences: 1807
Number of extensions: 10476
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)