BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG04RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 1304 0.0
>3x_Contig1769
Length = 25795
Score = 1304 bits (658), Expect = 0.0
Identities = 792/824 (96%), Gaps = 10/824 (1%)
Strand = Plus / Minus
Query: 45 gcttaccgccagatgatactcaaactaaatctatgaatgctaatggtagttctgaatttg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6474 gcttaccgccagatgatactcaaactaaatctatgaatgctaatggtagttctgaatttg 6415
Query: 105 atacttatcgactttgaattggagacaatggatgagtccggtgctttgctgaccaacgat 164
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6414 atgat-atcgactttgaattggagacaatggatgagtccggtgctttgctgaccaacgat 6356
Query: 165 tcgaaat-accatcgcttgtgcatttcgggagaaggttggactggcaggtggatttagct 223
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6355 tcgaaatcaccatcgcttgtgcatttcgggagaaggttggactggcaggtggatttagct 6296
Query: 224 cagttcattgagtcgcacgcacttcaaaacagctggctagtttgctgtggacctgaatcc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6295 cagttcattgagtcgcacgcacttcaaaacagctggctagtttgctgtggacctgaatcc 6236
Query: 284 ttgctaactgatggagaaagatatgcaaaacagaactactgtaattttgttaaagaattt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6235 ttgctaactgatggagaaagatatgcaaaacagaactactgtaattttgttaaagaattt 6176
Query: 344 tacgacatatagattgaatctaccaggtttgtaaaactatttatggtcttcctatttatg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6175 tacgacatatagattgaatctaccaggtttgtaaaactatttatggtcttcctatttatg 6116
Query: 404 aataaaataacccgatttgtaacttaaatcagaggtacagctgccccgtcacctctttta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6115 aataaaataacccgatttgtaacttaaatcagaggtacagctgccccgtcacctctttta 6056
Query: 464 tcacttccagctgcgtatagccaggtattggtctcgttgtttttagttcttttgataatc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6055 tcacttccagctgcgtatagccaggtattggtctcgttgtttttagttcttttgataatc 5996
Query: 524 tgaccacgtccaaatattgatctggacanacctcttacatattccacttcatgaccgagt 583
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5995 tgaccacgtccaaatattgatctggacaaacctcttacatattccacttcatgaccgagt 5936
Query: 584 ttaactaaaccatcaaatacatcttccggtatatcttnctctaactgaatgagagacaca 643
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5935 ttaactaaaccatcaaatacatcttccggtatatcttcctctaactgaatgagagacaca 5876
Query: 644 agagtgttgacagggtccggatgatcctctgccctcgtctagatgaggatactttgggat 703
||||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct: 5875 ggagtgttgaca-ggtccggatgatcctctgcctcggtctagatgagaatacttt-ggat 5818
Query: 704 gtggagacaggacacattcttgggctatccagtgactcctgtgggattcaccccaaagag 763
||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 5817 gtggagaca-gacaacatcttgggctatccagtgactcctgt-ggattcaacccaaagag 5760
Query: 764 aattaatttaaaaaaattttgt-catgggccgctaggttgcatgaaaaccaccctttttt 822
|||||| || ||||||| |||| ||| ||||||||||||||||| ||||||||| | |||
Sbjct: 5759 aattaaatttaaaaaatgttgtacat-ggccgctaggttgcatg-aaaccacccatattt 5702
Query: 823 cccatttcataaacgggagattcatcgctacctggaaatgatgg 866
|||||| ||||||||| |||||||||| || |||| ||||||||
Sbjct: 5701 cccattccataaacggtagattcatcgtta-ctggtaatgatgg 5659
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5930
Number of Sequences: 1807
Number of extensions: 5930
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)