BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZG05FM1.SCF screened BAC_end
         (893 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1777                                                        1088   0.0  

>3x_Contig1777 
          Length = 26319

 Score = 1088 bits (549), Expect = 0.0
 Identities = 598/608 (98%), Gaps = 5/608 (0%)
 Strand = Plus / Plus

                                                                         
Query: 86    ctctacaaaaatacaatccatttgctctgatcccgaaaacaattcagcgactacgtaaag 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11072 ctctacaaaaatacaatccatttgctctgatcccgaaaacaattcagcgactacgtaaag 11131

                                                                         
Query: 146   atttggattatattttcttgccaggtccaagaagtactcgcccacgtgaagtggggtaga 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11132 atttggattatattttcttgccaggtccaagaagtactcgcccacgtgaagtggggtaga 11191

                                                                         
Query: 206   atgacaattatcgattctaaacccgtcaaaaatggttgcctgaagtcttgtatactctga 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11192 atgacaattatcgattctaaacccgtcaaaaatggttgcctgaagtcttgtatactctga 11251

                                                                         
Query: 266   catcctctcccataaatacggagaatcctcaggtgcggaaccgtaccttaatttcacaca 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11252 catcctctcccataaatacggagaatcctcaggtgcggaaccgtaccttaatttcacaca 11311

                                                                         
Query: 326   gtccccccagacaatcacttctctacgtaggtatgccttggagtcctttgatgcaaaatc 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11312 gtccccccagacaatcacttctctacgtaggtatgccttggagtcctttgatgcaaaatc 11371

                                                                         
Query: 386   tactagtggattagagttccaaatccagccattgttagccaatgcatattccttaccatc 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11372 tactagtggattagagttccaaatccagccattgttagccaatgcatattccttaccatc 11431

                                                                         
Query: 446   tttggcaagcaatctggtgaaataaggctcagttaatggcgattcaggagtgatttttcc 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11432 tttggcaagcaatctggtgaaataaggctcagttaatggcgattcaggagtgatttttcc 11491

                                                                         
Query: 506   catctttggaccatgatcatcaatccgcanatactttatgcgattgtataattggtctaa 565
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 11492 catctttggaccatgatcatcaatccgcaaatactttatgcgattgtataattggtctaa 11551

                                                                         
Query: 566   gattacgcgaacgtcctcatcgtattccttgtacaggggtaaattc-attcatcc-aaat 623
             ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct: 11552 gattacgcgaacgtcctcatcgtattccttgtacaagggtaaattcaattcatccaaaat 11611

                                                                         
Query: 624   tttgcgtgcttcatttgc-acattgccatttcattctttcccatg-agttgtct-taaat 680
             |||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||  ||||
Sbjct: 11612 tttgcgtgcttcatttgcaacattgccattccattcttccccatgaagttgtctcaaaat 11671

                     
Query: 681   tgtgataa 688
             ||||||||
Sbjct: 11672 tgtgataa 11679


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5768
Number of Sequences: 1807
Number of extensions: 5768
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)