BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG05RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1261 1493 0.0
>3x_Contig1261
Length = 9103
Score = 1493 bits (753), Expect = 0.0
Identities = 840/862 (97%), Gaps = 6/862 (0%)
Strand = Plus / Plus
Query: 45 tcctcgaagaatttgtcgaacttggagttgttgatccgtcagtgttggttgtgacagctt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7974 tcctcgaagaatttgtcgaacttggagttgttgatccgtcagtgttggttgtgacagctt 8033
Query: 105 cattagagactaatgcttgcggaatgaaggggaatgcatgaggttcttccagcataggag 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8034 cattagagactaatgcttgcggaatgaaggggaatgcatgaggttcttccagcataggag 8093
Query: 165 atggactaggcgatccttccagaatagcagaaactgatgctgatccactttggttacttt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8094 atggactaggcgatccttccagaatagcagaaactgatgctgatccactttggttacttt 8153
Query: 225 tcagtctttgaagcttgttaccattcatgctatcgaatgaggtgcctaggacactgggag 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8154 tcagtctttgaagcttgttaccattcatgctatcgaatgaggtgcctaggacactgggag 8213
Query: 285 tcatatgacgacctgtcgaaccagtagaagaaatactaagcgttctgacgagcttatttg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8214 tcatatgacgacctgtcgaaccagtagaagaaatactaagcgttctgacgagcttatttg 8273
Query: 345 tctcatcatcatcatcagaggtaaaaccagcaggtggcaacttcaacgacttattctcac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8274 tctcatcatcatcatcagaggtaaaaccagcaggtggcaacttcaacgacttattctcac 8333
Query: 405 tagaagaggtcttcggcgtgaacccttcaaggataggagcgatcgattccatagcctttt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8334 tagaagaggtcttcggcgtgaacccttcaaggataggagcgatcgattccatagcctttt 8393
Query: 465 tcgtattcgaatctaaaaacagtggaggcatggtatttccgttgattgcctcttgaccct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8394 tcgtattcgaatctaaaaacagtggaggcatggtatttccgttgattgcctcttgaccct 8453
Query: 525 catcagaaattgaacctggagaagacatgactggcagttctgncatttgattataaccaa 584
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8454 catcagaaattgaacctggagaagacatgactggcagttctgcaatttgattataaccaa 8513
Query: 585 tgctgaaacttcagttaaaattattttgtagatcgttgcaattaatcgatttctgttata 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8514 tgctgaaacttcagttaaaattattttgtagatcgttgcaattaatcgatttctgttata 8573
Query: 645 agcggatgcatggtacgattattccccatgtgtttaattttgtatataaa-ttatatgtg 703
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8574 agcggatgcatggtacgattattccccatgtgtttaattttgtatataaatttatatgtg 8633
Query: 704 aaggattatagtgaaaacttgatagaaaactgtgagtaattcttgagtaaagaccagtat 763
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 8634 aaggataatagtgaaaacttgatagaaaactgtgagtaattctgaagtaaagaccagtat 8693
Query: 764 ctaagccaacacctccatgtgtttcgctggtgagatttcagactgtgggnatggttacta 823
||||| |||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct: 8694 ctaag-caacacctccatgtgtttcgctagtgagatttcagactgt-ggtatggttacta 8751
Query: 824 tctaatggcatctatggttgaagtt-catagnaatttttctattccagtctaagaat-ac 881
|||||||||||||| | ||||||| ||||| | || ||||| | ||||||||||| ||
Sbjct: 8752 tctaatggcatctaatggtgaagttacatagtatcttctctatccaagtctaagaatcac 8811
Query: 882 atttgccaggttgatccccctt 903
||||| ||||||||||||||||
Sbjct: 8812 atttg-caggttgatccccctt 8832
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6170
Number of Sequences: 1807
Number of extensions: 6170
Number of successful extensions: 189
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)