BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG06RM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1228 1308 0.0
>3x_Contig1228
Length = 5992
Score = 1308 bits (660), Expect = 0.0
Identities = 752/777 (96%), Gaps = 5/777 (0%)
Strand = Plus / Plus
Query: 45 tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 580
Query: 105 gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 640
Query: 165 aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 700
Query: 225 gtattgcacgaaaaccatccactaacgaaaatcaagaaaaacatgaatcagaactacgag 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gtattgcacgaaaaccatccactaacgaaaatcaagaaaaacatgaatcagaactacgag 760
Query: 285 tggttgaaagaaaatttgttgaatttgttcaatgacatatcttcatcattttgcaacaag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tggttgaaagaaaatttgttgaatttgttcaatgacatatcttcatcattttgcaacaag 820
Query: 345 gtcggccctgacatcgataaagatcatccaacagtagttttgttcaagagtatcgcgcgt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gtcggccctgacatcgataaagatcatccaacagtagttttgttcaagagtatcgcgcgt 880
Query: 405 acgcttggccaactttacttaaaactggccgaggaaccatcaaaaacttttgctgaattg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 acgcttggccaactttacttaaaactggccgaggaaccatcaaaaacttttgctgaattg 940
Query: 465 atgtatgatagcgacgatgaagagcaaactgataaggaggctctagagaaggctaaaaat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 atgtatgatagcgacgatgaagagcaaactgataaggaggctctagagaaggctaaaaat 1000
Query: 525 gcacaatcgaaagccattccattggttgaatatgctatcangtacttgcaagaagcgaaa 584
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1001 gcacaatcgaaagccattccattggttgaatatgctatcaggtacttgcaagaagcgaaa 1060
Query: 585 gtggaagatgaaccctcaacctgggtcgacgtcgctgaagcgatcattgatttagggaac 644
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 gtggaagatgaacctcaaacctgggtcgacgtcgctgaagcgatcattgatttagggaac 1120
Query: 645 ctttacgattacgattcgaangaacaggaagactcttacaagagagcanaggaaatttta 704
|||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1121 ctttacgattacgaatcgaaagaacaggaagactcttacaagagagcagaggaaatttta 1180
Query: 705 ctgtaagctaacaaggc-actcatggt-aattcccagttatcctggacaa-ttgttggac 761
||| | ||||||||||| ||||||||| ||| || ||||||||||||||| |||||| ||
Sbjct: 1181 ctgaaggctaacaaggcaactcatggtaaataccaagttatcctggacaatttgttgaac 1240
Query: 762 aagaattaagtttcccttc-aggtattagtggaaaaattttattttttagaaaaaca 817
|| |||||||||||| || | ||| ||||||||| |||| |||| ||||||||||
Sbjct: 1241 aaagattaagtttcccctcaatgta-tagtggaaatatttagttttatagaaaaaca 1296
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,408
Number of Sequences: 1807
Number of extensions: 12408
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)