BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG07FM1.SCF screened BAC_end
(840 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig846 523 e-148
>3x_Contig846
Length = 2695
Score = 523 bits (264), Expect = e-148
Identities = 283/287 (98%), Gaps = 2/287 (0%)
Strand = Plus / Plus
Query: 87 ctgcgatggaaacacgcttacgttcaccaccagagacacctctcacgaaatcatcaccaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctgcgatggaaacacgcttacgttcaccaccagagacacctctcacgaaatcatcaccaa 707
Query: 147 ctttagtgttataagtgtgcttcaaaccgaaaattgttgcatataagtctctgatgaatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ctttagtgttataagtgtgcttcaaaccgaaaattgttgcatataagtctctgatgaatt 767
Query: 207 cgatatactgttgtctggtaaaatcgttaattcttttgcttggagtcttacaagcgacag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cgatatactgttgtctggtaaaatcgttaattcttttgcttggagtcttacaagcgacag 827
Query: 267 caaaatctaaagtctgttgcacagtcaaatgcgggaaatggacatccatttcaccgntgt 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 828 caaaatctaaagtctgttgcacagtcaaatgcgggaaatggacatccatttcaccgttgt 887
Query: 327 atataacatcccgacttgaaatactttcaacatatctttttgtgaga 373
||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 888 atataacat-ccgacttgaaatac-ttcaacatatccttttgtgaga 932
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,691
Number of Sequences: 1807
Number of extensions: 25691
Number of successful extensions: 1018
Number of sequences better than 1.0e-20: 1
length of query: 840
length of database: 10,358,551
effective HSP length: 16
effective length of query: 824
effective length of database: 10,329,639
effective search space: 8511622536
effective search space used: 8511622536
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)