BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG08FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1638 1102 0.0
>3x_Contig1638
Length = 14042
Score = 1102 bits (556), Expect = 0.0
Identities = 617/630 (97%), Gaps = 7/630 (1%)
Strand = Plus / Plus
Query: 84 ccctctctggttgtcatgtcggagtttgcgctcaattcgtcgtttatacaggaatctatt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9594 ccctctctggttgtcatgtcggagtttgcgctcaattcgtcgtttatacaggaatctatt 9653
Query: 144 ttgtacatagtggattctcttaatctacgccgagattgttgaaaccggacctggatttgg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9654 ttgtacatagtggattctcttaatctacgccgagattgttgaaaccggacctggatttgg 9713
Query: 204 ccctcattctttctatacgtgcctttaattggttcgtaacttctgcagctcgtttccacg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9714 ccctcattctttctatacgtgcctttaattggttcgtaacttctgcagctcgtttccacg 9773
Query: 264 attcctcttgcaacatatggttgttcaagtttagggaattgacacgtctaggtagatcgt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9774 attcctcttgcaacatatggttgttcaagtttagggaattgacacgtctaggtagatcgt 9833
Query: 324 cgctactttcactaggcgatctgaccctttgaggagtcgtagcatttttagtagatctca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9834 cgctactttcactaggcgatctgaccctttgaggagtcgtagcatttttagtagatctca 9893
Query: 384 gaggtgataaggtagttgctgttaatcttcctctgctaatggacgaggatatgggtgaat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9894 gaggtgataaggtagttgctgttaatcttcctctgctaatggacgaggatatgggtgaat 9953
Query: 444 ctgttgacatggtatcggaagtaccgcccgtcagtttactctctaactccttgatcttta 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954 ctgttgacatggtatcggaagtaccgcccgtcagtttactctctaactccttgatcttta 10013
Query: 504 aattcttagcgttcaattgatccttcgaatcctgcaattgcctttgtaaattggaaacgt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10014 aattcttagcgttcaattgatccttcgaatcctgcaattgcctttgtaaattggaaacgt 10073
Query: 564 atgtctcagactcgttc-agagtttatttactttggaaagttgtaa--ttgattgattta 620
||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct: 10074 atgtctcagactcgttcaagagtttatttactttggaaagttgtaaattggattgattta 10133
Query: 621 agtt-gataagagatcgttgcgctccttta-ccattcttgnctctcttggcttaa-ttgt 677
|||| ||||||||||||||||||||| ||| ||||||||| |||||||| ||||| ||||
Sbjct: 10134 agttggataagagatcgttgcgctcccttagccattcttgtctctcttgtcttaatttgt 10193
Query: 678 tcactccatcgtttaaa-gggacattctgt 706
||||| ||||||||||| | ||||||||||
Sbjct: 10194 tcacttcatcgtttaaatgtgacattctgt 10223
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5563
Number of Sequences: 1807
Number of extensions: 5563
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)