BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG08RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig913 1334 0.0
>3x_Contig913
Length = 2857
Score = 1334 bits (673), Expect = 0.0
Identities = 769/790 (97%), Gaps = 9/790 (1%)
Strand = Plus / Plus
Query: 49 atgagtaaacaaaaa-gtatacgattacccgtgatcttccgcaattagtacagctagtat 107
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2033 atgagtaaacaaaaaagtatacgattacccgtgatcttccgcaattagtacagctagtat 2092
Query: 108 gcgaatattttagcacctataaacatcccgttttcattgaattagttcattcgtttaaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2093 gcgaatattttagcacctataaacatcccgttttcattgaattagttcattcgtttaaca 2152
Query: 168 cataaactcatcgatttcctctttttctttagttttttcatcttttcatgtttagccaat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2153 cataaactcatcgatttcctctttttctttagttttttcatcttttcatgtttagccaat 2212
Query: 228 accgtgtcaagtagggaaaagatgttgaagctttaggaaaaaaaatcgaaactgaggttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2213 accgtgtcaagtagggaaaagatgttgaagctttaggaaaaaaaatcgaaactgaggttt 2272
Query: 288 aggaaaaagaataggaaactttgagaaacataagactaacagtgagtggtactcatcaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2273 aggaaaaagaataggaaactttgagaaacataagactaacagtgagtggtactcatcaat 2332
Query: 348 ccaacttggctcttttgcattgcagcatacgcttcttcctttcgtttacgattgtatact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 ccaacttggctcttttgcattgcagcatacgcttcttcctttcgtttacgattgtatact 2392
Query: 408 gtgagatcgctaccaggaaacggcaggttttttttctctttcgtgcaatttaataccgtt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2393 gtgagatcgctaccaggaaacggcaggttttttttctctttcgtgcaatttaataccgtt 2452
Query: 468 agcaattaatttaatttattcacatcgatattggctgaatctcactcatattatttactt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2453 agcaattaatttaatttattcacatcgatattggctgaatctcactcatattatttactt 2512
Query: 528 tcagtttgtccaaccactcaactgtctcgagattgctcactttatcgctgaa-tttaccg 586
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2513 tcagtttgtccaaccactcaactgtctcgagattgctcactttatcgctgaattttaccg 2572
Query: 587 atagtacatttatattacaggcattttttaggttttgttattcctaagtctgntgnattg 646
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 2573 atagtacatttatattacaggcattttttaggttttgttattcctaagtctgttgtattt 2632
Query: 647 ggtttgggtttcgtatttcttcc-ttgaattgacaaaa-tct-acccat-attacac-at 701
||||| ||||||||||||||||| |||||||||||||| ||| |||||| ||||||| ||
Sbjct: 2633 ggttttggtttcgtatttcttcctttgaattgacaaaattctaacccataattacacgat 2692
Query: 702 gttgagatctgctgctgtcagaaggtc-ttatcaangggcgaggtttcttcgttactttc 760
||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||
Sbjct: 2693 gttgagatctgctgctgtcagaaggtctttatcaaagggcgaagtttcttcgttactttc 2752
Query: 761 atatagatacaaatctt-ttttgcaactgcttttgacactgcgccttgattggtaactcc 819
||||||||||||||||| ||||||||||||||| |||||| || |||||||||||||
Sbjct: 2753 atatagatacaaatcttcttttgcaactgctttgaacactgttgctagattggtaactcc 2812
Query: 820 aaaggcattg 829
||||||||||
Sbjct: 2813 aaaggcattg 2822
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7572
Number of Sequences: 1807
Number of extensions: 7572
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)