BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG09FM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1585 549 e-156
3x_Contig1475 464 e-130
3x_Contig352 311 1e-84
>3x_Contig1585
Length = 11490
Score = 549 bits (277), Expect = e-156
Identities = 284/285 (99%), Gaps = 1/285 (0%)
Strand = Plus / Minus
Query: 89 tgccacattttctgctaaaagttgtaggacgaatttctggatgttatcgctcattcttct 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgccacattttctgctaaaagttgtaggacgaatttctggatgttatcgctcattcttct 234
Query: 149 accttcttctacagcatttaaaatagaagcaaagttatcatcgctcaacacaatgtcaga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 accttcttctacagcatttaaaatagaagcaaagttatcatcgctcaacacaatgtcaga 174
Query: 209 cgcatccttcgcaacgtcagaaccattgattcccatggcaataccaacattggcaatctt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 cgcatccttcgcaacgtcagaaccattgattcccatggcaataccaacattggcaatctt 114
Query: 269 caacgatggtgaatcgttcacaccatctcctgtcatggcacagaacctgtttcgacgatg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 caacgatggtgaatcgttcacaccatctcctgtcatggcacagaacctgtttcgacgatg 54
Query: 329 caaggcttcgatcatgcgtaccttagtttgtggtgcacaacgggc 373
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 53 caagg-ttcgatcatgcgtaccttagtttgtggtgcacaacgggc 10
>3x_Contig1475
Length = 10676
Score = 464 bits (234), Expect = e-130
Identities = 465/542 (85%)
Strand = Plus / Plus
Query: 89 tgccacattttctgctaaaagttgtaggacgaatttctggatgttatcgctcattcttct 148
||||||||| ||||| |||||||||| ||||||||| ||||| ||||| |||||||||||
Sbjct: 8516 tgccacattctctgccaaaagttgtaagacgaatttttggatattatcactcattcttct 8575
Query: 149 accttcttctacagcatttaaaatagaagcaaagttatcatcgctcaacacaatgtcaga 208
||||||||| ||||| || |||||||| ||||||||||| || ||||| || ||||||||
Sbjct: 8576 accttcttcaacagcgttcaaaatagatgcaaagttatcgtcactcaaaacgatgtcaga 8635
Query: 209 cgcatccttcgcaacgtcagaaccattgattcccatggcaataccaacattggcaatctt 268
|||||||| ||||| ||||||||||| || ||||| ||||||||||| || ||||| ||
Sbjct: 8636 tgcatccttggcaacatcagaaccattaatacccatagcaataccaacgttagcaatttt 8695
Query: 269 caacgatggtgaatcgttcacaccatctcctgtcatggcacagaacctgtttcgacgatg 328
||| |||||||||||||| |||||||| |||||||||||||||||| || ||| ||||||
Sbjct: 8696 caatgatggtgaatcgttaacaccatcacctgtcatggcacagaacttgcttctacgatg 8755
Query: 329 caaggcttcgatcatgcgtaccttagtttgtggtgcacaacgggcaataaccaagggcaa 388
|| || || ||||| || ||||| || ||||| |||||||| ||||| || || |||||
Sbjct: 8756 taatgcctcaatcatacggaccttggtctgtggggcacaacgagcaatgactaaaggcaa 8815
Query: 389 aactggtagctcatcgatttccttatcactcaaagcgtcgaaatcagttgctgtcataac 448
||| ||| ||||| ||||| | |||||| ||||| |||||||||||||| | ||||||
Sbjct: 8816 aacacgtaaatcatcaatttcttgatcacttaaagcatcgaaatcagttgcggccataac 8875
Query: 449 cataaaattaacgacttcttttggataatgatataaattgtgaggtaagatgccaacttc 508
||| ||||| || ||||| ||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 8876 catgaaatttaccacttcctttggataatggtataagttatgaggtaagataccaacttc 8935
Query: 509 ttgagctatagacttggcagtaccagggaagtcacctgtcaacatatggacgttgatacc 568
|||||| || ||||||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct: 8936 ttgagcaatggacttggcagtaccagggaagtcacctgttaacatatgcacattgattcc 8995
Query: 569 agctaggtgacatttttttacagcagcaagcgattcgcgccttggtggatcgtatatacc 628
|||| | ||||||||||| ||||| ||||| ||||| | ||||||||||| || |||||
Sbjct: 8996 agcttgatgacattttttaacagcggcaagtgattcttgtcttggtggatcataaatacc 9055
Query: 629 ga 630
||
Sbjct: 9056 ga 9057
>3x_Contig352
Length = 1459
Score = 311 bits (157), Expect = 1e-84
Identities = 185/192 (96%), Gaps = 2/192 (1%)
Strand = Plus / Plus
Query: 493 gtaagatgccaacttcttgagctatagacttggcagtaccagggaagtcacctgtcaaca 552
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 gtaagatgcccacttcttgagctatagacttggcagtaccagggaagtcacctgtcaaca 78
Query: 553 tatggacgttgataccagctaggtgacatttttttacagcagcaagcgattcgcgccttg 612
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 79 tatggacgttgataccagctaggtgacattttttaacagcagcaagcgattcgcgccttg 138
Query: 613 gtggatcgtatataccgactaat-ccanaaattgtagattattttcgac-aagtcacgtt 670
||||||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||
Sbjct: 139 gtggatcgtatataccgactaatcccaaaaatgttagattattttcgacaaagtcacgtt 198
Query: 671 ccttcaatagtt 682
||||||||||||
Sbjct: 199 ccttcaatagtt 210
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5510
Number of Sequences: 1807
Number of extensions: 5510
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 3
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)