BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG09RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 1334 0.0
>3x_Contig1173
Length = 7454
Score = 1334 bits (673), Expect = 0.0
Identities = 757/778 (97%), Gaps = 6/778 (0%)
Strand = Plus / Plus
Query: 54 ctttcatctcgttgacgtgacaagaatgatcccaagttggaatgcttttcttataaagca 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5413 ctttcatctcgttgacgtgacaagaatgatcccaagttggaatgcttttcttataaagca 5472
Query: 114 aatccgtcaccaaatacttattgacgtaacgaactgcaaactcttgaaatggcactgttg 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5473 aatccgtcaccaaatacttattgacgtaacgaactgcaaactcttgaaatggcactgttg 5532
Query: 174 aaatatcaggtgctgattccgattcttcgatcacttcaattccatttcttccatttgtaa 233
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5533 aaatatcaggtgctgattccgattcttcgatcacttcaattccatttcttccagttgtaa 5592
Query: 234 cagaaaacaaagatgctcttctattaccttcatctgcttcaaagcatcgagattcgtttt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5593 cagaaaacaaagatgctcttctattaccttcatctgcttcaaagcatcgagattcgtttt 5652
Query: 294 caacactagggattgataacgaatgtttagcttccatgaaaaagctgtctacgtcgaaag 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5653 caacactagggattgataacgaatgtttagcttccatgaaaaagctgtctacgtcgaaag 5712
Query: 354 catcatcttctaaagaagtagcttcactttcaactacgtttatctgatcttcttcatcac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5713 catcatcttctaaagaagtagcttcactttcaactacgtttatctgatcttcttcatcac 5772
Query: 414 tgctactgtcatcagtgtacatgctatactcggtataactcattacctggatacttctat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5773 tgctactgtcatcagtgtacatgctatactcggtataactcattacctggatacttctat 5832
Query: 474 gttcttgctcttgcaacctgcagttttttcatctgatgcttgatcattcaactctataaa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5833 gttcttgctcttgcaacctgcagttttttcatctgatgcttgatcattcaactctataaa 5892
Query: 534 gtggtatgtgtgtgacattgaccgaacatcctttgaaacaaacccttgagttgttaaatc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5893 gtggtatgtgtgtgacattgaccgaacatcctttgaaacaaacccttgagttgttaaatc 5952
Query: 594 angtctaatacctaaaaattta-gggacgtaaagttatacatttcaattgcttncaacag 652
| ||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||||
Sbjct: 5953 aggtctaatacctaaaattttaggggacgtaagtttatacatttcaattgcttccaacag 6012
Query: 653 tngagaaacgcttatnccaatctgcatctgttggaaacttcacaaggcaacgtcgatgcg 712
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6013 t-gagaaacgcttatcccaatctgcatctgttggaaacttcacaaggcaacgtcgatgcg 6071
Query: 713 atgtactgtgacacattttc-aaaaaaaaaaaccataatttgttcggttcctttagaagc 771
|||||||||||||||||| | |||||||||||||||||| ||| ||| ||| ||||||||
Sbjct: 6072 atgtactgtgacacatttccaaaaaaaaaaaaccataatatgtccgg-tcccttagaagc 6130
Query: 772 aaag-aaatcatccccggaaa-gccctcattaaatatgcacgacatacaatcaataac 827
|||| |||||||| || |||| |||||||| ||||||||||||||||||||||||||
Sbjct: 6131 aaagaaaatcatcaccagaaatgccctcatagaatatgcacgacatacaatcaataac 6188
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,261
Number of Sequences: 1807
Number of extensions: 12261
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)