BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG10FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig720 1243 0.0
>3x_Contig720
Length = 2178
Score = 1243 bits (627), Expect = 0.0
Identities = 684/701 (97%), Gaps = 2/701 (0%)
Strand = Plus / Minus
Query: 88 attccattgtttcgaggatagcttgattttatcttcaaacagcattttcgattacttcaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 attccattgtttcgaggatagcttgattttatcttcaaacagcattttcgattacttcaa 1023
Query: 148 accgaaaaccattgtgccttttttcactgttctgacctaatatacgttatctgctctatc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 accgaaaaccattgtgccttttttcactgttctgacctaatatacgttatctgctctatc 963
Query: 208 ataaaaccggtggctaatattcgcaggattcataggaagcgggacagtgctaataataat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 ataaaaccggtggctaatattcgcaggattcataggaagcgggacagtgctaataataat 903
Query: 268 accattaagatatatcagctgttaccatgtcttcggttattcttcctccacaagctccag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 accattaagatatatcagctgttaccatgtcttcggttattcttcctccacaagctccag 843
Query: 328 ttgagcgtttgaacagaactgctagtttcaggactttggaaagagaatcaagatttatta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ttgagcgtttgaacagaactgctagtttcaggactttggaaagagaatcaagatttatta 783
Query: 388 atcctccaaaggataaatctgcatacccattcctagcggacgctgtacagccacacattg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 atcctccaaaggataaatctgcatacccattcctagcggacgctgtacagccacacattg 723
Query: 448 gctccttcaatgcattgactgagggacctgatggtggtttgttaaacctaggggcanaag 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 722 gctccttcaatgcattgactgagggacctgatggtggtttgttaaacctaggggcaaaag 663
Query: 508 atattggatccaaagttattttcgatggtaagggatcggacactaaccc-aactacttgn 566
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 662 atattggatccaaagttattttcgatggtaagggatcggacactaacccaaactacttgg 603
Query: 567 gtaacaaattatctttgagtattgaacaggtgtctatttctaaaccaactt-taacgatg 625
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 602 gtaacaaattatctttgagtattgaacaggtgtctatttctaaaccaacttctaacgatg 543
Query: 626 gtgtttcttctgcattagaacgcaaagtttttccatttgaatccagacagagattgactt 685
|||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct: 542 gtgtttcttctgcagtagaacgcaaggttttcccatctgaatccagacagagattgactt 483
Query: 686 catacagagggaaaattttgcttaaattgaaatggtcggtcaatgatggtgaaaaaacct 745
|||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |
Sbjct: 482 catacagagggaaaattttgctgaagttgaaatggtcggtcaatgatggtgaagaaactt 423
Query: 746 ttactgtaataagaaactgtggtggtttggcaattatgctt 786
|||||| | ||||| |||||||||||||| |||| ||||||
Sbjct: 422 ttactgaagtaagagactgtggtggtttgccaatcatgctt 382
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7413
Number of Sequences: 1807
Number of extensions: 7413
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)