BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC45ZG11FM1.SCF screened BAC_end (933 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig625 983 0.0 >3x_Contig625 Length = 2660 Score = 983 bits (496), Expect = 0.0 Identities = 612/640 (95%), Gaps = 8/640 (1%) Strand = Plus / Minus Query: 86 ctcaaaacgaatccgctgaagacaaggaaaactggattatcccaggtttcgttgggtccc 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2087 ctcaaaacgaatccgctgaagacaaggaaaactggattatcccaggtttcgttgggtccc 2028 Query: 146 acaatgtgtggtagcatgactatcaacatctgcccacttctcatttttttttctaaatag 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2027 acaatgtgtggtagcatgactatcaacatctgcccacttctcatttttttttctaaatag 1968 Query: 206 ctccataatataaagttaataggaatggtttgtatattataatgaatgttctttcagtga 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1967 ctccataatataaagttaataggaatggtttgtatattataatgaatgttctttcagtga 1908 Query: 266 ttaacaattgttaatgtccatcctaagtttttccttagtgtaataatgtcgatgccttaa 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1907 ttaacaattgttaatgtccatcctaagtttttccttagtgtaataatgtcgatgccttaa 1848 Query: 326 tctagcgccgactgacgcccatctgtatttttaattggtgttgtcattcatggtagtgtg 385 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1847 tctagcgccgactgacgcccatctgtattttt-attggtgttgtcattcatggtagtgtg 1789 Query: 386 tgtttttttttttctgtatactttagaggagaacttcagtacctcattaagggcagccgc 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1788 tgtttttttttttctgtatactttagaggagaacttcagtacctcattaagggcagccgc 1729 Query: 446 tttattatgaggtatagcgcatcctcaactctgttcacttgcatgttttaaagttatttc 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1728 tttattatgaggtatagcgcatcctcaactctgttcacttgcatgttttaaagttatttc 1669 Query: 506 tactatctcttac-ttacctaaaacgtac-attaacgacgcattgtacagttgggtacct 563 ||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||| Sbjct: 1668 tactatctcttactttacctaaacggtacaattaacgacgcattgtacagtt-ggtacct 1610 Query: 564 tcgtaattacttaaataggtaattaccttggttgaaaaattttaaaaaagttaaaattgg 623 |||||||||||||||||||||||||| | || |||||||| ||||||||| ||||| ||| Sbjct: 1609 tcgtaattacttaaataggtaattacatagg-tgaaaaatattaaaaaaggtaaaaatgg 1551 Query: 624 gaacaaaactgcaggaaccgggtgaataaagcctactttaaccttctcatgaaaataatt 683 ||||||||||||||| | ||||||| | |||||||| ||||||| ||||||| | || Sbjct: 1550 gaacaaaactgcagg-agcgggtgagt-aagcctacattaacctctccatgaaataattt 1493 Query: 684 gttataaataaaacggttctg-atcttattttggtcaatt 722 |||||||||| | |||||||| ||||||||| | |||||| Sbjct: 1492 gttataaatagagcggttctgaatcttatttggttcaatt 1453 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,219 Number of Sequences: 1807 Number of extensions: 14219 Number of successful extensions: 113 Number of sequences better than 1.0e-20: 1 length of query: 933 length of database: 10,358,551 effective HSP length: 16 effective length of query: 917 effective length of database: 10,329,639 effective search space: 9472278963 effective search space used: 9472278963 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)