BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG11RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 1441 0.0
>3x_Contig1582
Length = 14087
Score = 1441 bits (727), Expect = 0.0
Identities = 834/862 (96%), Gaps = 6/862 (0%)
Strand = Plus / Plus
Query: 46 ctaagaaattggaggttttgatccaggtgttatccatgaagaaaatacagagaaagatga 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ctaagaaattggaggttttgatccaggtgttatccatgaagaaaatacagagaaagatga 929
Query: 106 tgtcagattataaaaatcttgagaaaatgctcactcttttattgcgtgcatctcgtctcg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 tgtcagattataaaaatcttgagaaaatgctcactcttttattgcgtgcatctcgtctcg 989
Query: 166 actcttacttcttagtctcactttgtgatcaagtcatggagagtgtgtcgggcctaatca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 actcttacttcttagtctcactttgtgatcaagtcatggagagtgtgtcgggcctaatca 1049
Query: 226 aaattccatctgctgtatgcctatttgacgaatctgcgattgattgcctaaaaccaaatg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 aaattccatctgctgtatgcctatttgacgaatctgcgattgattgcctaaaaccaaatg 1109
Query: 286 atgaaacaatagataaacaagttgccgttgttaaaacagctaaggataggaaacgaaagg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 atgaaacaatagataaacaagttgccgttgttaaaacagctaaggataggaaacgaaagg 1169
Query: 346 agtatttctcgcaactcgaaaccttgcatatcaatcttgttgatttccaaaggaaagacc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 agtatttctcgcaactcgaaaccttgcatatcaatcttgttgatttccaaaggaaagacc 1229
Query: 406 cacagttgcgttggatgtctatttgtcacatattgcgtatagtgcaggtcattcaaatga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 cacagttgcgttggatgtctatttgtcacatattgcgtatagtgcaggtcattcaaatga 1289
Query: 466 atttagagattaaacctaaccaggaggtgttaattcaaagtttcgagttaacgaagacaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 atttagagattaaacctaaccaggaggtgttaattcaaagtttcgagttaacgaagacaa 1349
Query: 526 aacatccatctctcatatcgaattgtatggtaacaatgttaaatgtttgt-acaaaatga 584
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1350 aacatccatctctcatatcgaattgtatggtaacaatgttaaatgtttgtaacaaaatga 1409
Query: 585 tttcccttgngaactataactacgatatcgattccacctatcgcacagactatgtgagac 644
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1410 tttcccttgggaactataactacgatatcgattccacctatcgcacagactatgtgagac 1469
Query: 645 aatatgtgggatacttggacacatcaaaaccaaactttgagggaagatactttaaagaaa 704
||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1470 aatatgtggaatacttggacacatcaaaaccaaactttgaggaagaatactttaaagaaa 1529
Query: 705 ataataacgttgaaaatcctaacttttttgtggacttcaaagcgtttgtttgtttggtta 764
||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct: 1530 ttaataacgttgaaaatcctaacttttttgtggactccaaagcgtttg-ttggttggtta 1588
Query: 765 tgcccgaagaaggccctatgggcgttgtcaaagctgaaaatcagatttcatttcaccttt 824
|| |||| ||||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 1589 tg-ccgaggaagg-cctatgggcgttgtcaaagctgaaaatcagattccattcaacctta 1646
Query: 825 agccccgagatttggaaataatgaatacttttggtaagctaaatacaaaggattgggtgg 884
||||| |||| ||||||||||||||| ||||||||||||| |||||||| | ||| |
Sbjct: 1647 agcccgaagatatggaaataatgaataactttggtaagctaataacaaaggagt-ggttg 1705
Query: 885 ttagatatgttgcaacattttc 906
||||||||| ||||||||||||
Sbjct: 1706 ttagatatg-tgcaacattttc 1726
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7153
Number of Sequences: 1807
Number of extensions: 7153
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)