BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC45ZG12FM1.SCF screened BAC_end (903 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1125 973 0.0 >3x_Contig1125 Length = 5749 Score = 973 bits (491), Expect = 0.0 Identities = 564/588 (95%), Gaps = 1/588 (0%) Strand = Plus / Plus Query: 82 tacagcctcatcagacgactagttattactgtactgactgtgctttttttatttgatata 141 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 3613 tacagcctcatcagacgactagttattactgtactgactgtgccttttttatttgatata 3672 Query: 142 agaggagaatttaatataatcgagatactaaaccgaaaacatattaagaaataagaactg 201 ||||||||||||||||||||||||||||||||||| ||||||||||| ||| || || || Sbjct: 3673 agaggagaatttaatataatcgagatactaaaccggaaacatattaaaaaaaaaaaaatg 3732 Query: 202 gtcattgggcatattttgagagttgtaagattctaaactgatattgatatttagaaaagc 261 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3733 gtaattgggaatattttgagagttgtaagattctaaactgatattgatatttagaaaagc 3792 Query: 262 tggaaataacaacgaatagaagtttaaacaggaatcaacgaataacagcagtgaaaaaaa 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3793 tggaaataacaacgaatagaagtttaaacaggaatcaacgaataacagcagtgaaaaaaa 3852 Query: 322 ttgaaactattatcaacacattataattgaattggtgcaaatgaattatccgcctccctt 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3853 ttgaaactattatcaacacattataattgaattggtgcaaatgaattatccgcctccctt 3912 Query: 382 gtcaggattccagaaacctgctgggcaagcggtgcctcagatggtgggtacgccgcaagc 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3913 gtcaggattccagaaacctgctgggcaagcggtgcctcagatggtgggtacgccgcaagc 3972 Query: 442 tgttactcagcagcttcaccagcatccgccaggtttgatgggaaatcaagggaaacaaca 501 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 3973 tgttactcagcagcttcaccagcatccgccaggtttgatgggaaatcaaggaaaccaaca 4032 Query: 502 tcagccggccc-actaaaacatgtncttnctatgatgatgaaccangttcagaatgtgat 560 ||||||||||| |||||| |||| ||| |||||||||||||||| |||||||||||||| Sbjct: 4033 tcagccggcccaactaaacaatgtccttcctatgatgatgaaccaggttcagaatgtgat 4092 Query: 561 tactggcggtgcagggggaacacagcaagctgtgggttctccttatggtggaacacctaa 620 |||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||| Sbjct: 4093 aactggcggtgcagggggaccacagcaagctgtgggtcctcctaatgttggaacacctaa 4152 Query: 621 tgcagcccaggctgcgttagtggcttaacaattgtcccatgctaataa 668 ||||||||||||||||||||||||| | ||||||||| |||||||||| Sbjct: 4153 tgcagcccaggctgcgttagtggctcagcaattgtccaatgctaataa 4200 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7307 Number of Sequences: 1807 Number of extensions: 7307 Number of successful extensions: 53 Number of sequences better than 1.0e-20: 1 length of query: 903 length of database: 10,358,551 effective HSP length: 16 effective length of query: 887 effective length of database: 10,329,639 effective search space: 9162389793 effective search space used: 9162389793 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)