BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZG12FM1.SCF screened BAC_end
         (903 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1125                                                         973   0.0  

>3x_Contig1125 
          Length = 5749

 Score =  973 bits (491), Expect = 0.0
 Identities = 564/588 (95%), Gaps = 1/588 (0%)
 Strand = Plus / Plus

                                                                        
Query: 82   tacagcctcatcagacgactagttattactgtactgactgtgctttttttatttgatata 141
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3613 tacagcctcatcagacgactagttattactgtactgactgtgccttttttatttgatata 3672

                                                                        
Query: 142  agaggagaatttaatataatcgagatactaaaccgaaaacatattaagaaataagaactg 201
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||| || || ||
Sbjct: 3673 agaggagaatttaatataatcgagatactaaaccggaaacatattaaaaaaaaaaaaatg 3732

                                                                        
Query: 202  gtcattgggcatattttgagagttgtaagattctaaactgatattgatatttagaaaagc 261
            || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3733 gtaattgggaatattttgagagttgtaagattctaaactgatattgatatttagaaaagc 3792

                                                                        
Query: 262  tggaaataacaacgaatagaagtttaaacaggaatcaacgaataacagcagtgaaaaaaa 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3793 tggaaataacaacgaatagaagtttaaacaggaatcaacgaataacagcagtgaaaaaaa 3852

                                                                        
Query: 322  ttgaaactattatcaacacattataattgaattggtgcaaatgaattatccgcctccctt 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3853 ttgaaactattatcaacacattataattgaattggtgcaaatgaattatccgcctccctt 3912

                                                                        
Query: 382  gtcaggattccagaaacctgctgggcaagcggtgcctcagatggtgggtacgccgcaagc 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3913 gtcaggattccagaaacctgctgggcaagcggtgcctcagatggtgggtacgccgcaagc 3972

                                                                        
Query: 442  tgttactcagcagcttcaccagcatccgccaggtttgatgggaaatcaagggaaacaaca 501
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 3973 tgttactcagcagcttcaccagcatccgccaggtttgatgggaaatcaaggaaaccaaca 4032

                                                                        
Query: 502  tcagccggccc-actaaaacatgtncttnctatgatgatgaaccangttcagaatgtgat 560
            ||||||||||| ||||||  |||| ||| |||||||||||||||| ||||||||||||||
Sbjct: 4033 tcagccggcccaactaaacaatgtccttcctatgatgatgaaccaggttcagaatgtgat 4092

                                                                        
Query: 561  tactggcggtgcagggggaacacagcaagctgtgggttctccttatggtggaacacctaa 620
             |||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||
Sbjct: 4093 aactggcggtgcagggggaccacagcaagctgtgggtcctcctaatgttggaacacctaa 4152

                                                            
Query: 621  tgcagcccaggctgcgttagtggcttaacaattgtcccatgctaataa 668
            ||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct: 4153 tgcagcccaggctgcgttagtggctcagcaattgtccaatgctaataa 4200


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7307
Number of Sequences: 1807
Number of extensions: 7307
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)