BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZG12RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1252 1162 0.0
>3x_Contig1252
Length = 5616
Score = 1162 bits (586), Expect = 0.0
Identities = 712/741 (96%), Gaps = 11/741 (1%)
Strand = Plus / Plus
Query: 48 cttcatcaattcaggaccaattaaggaatacacaatatcaaaacctttaccaaatcactt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4144 cttcatcaattcaggaccaattaaggaatacacaatatcaaaacctttaccaaatcactt 4203
Query: 108 ctacagacatttttggcgtgttcgtgaagaacacattggttcatattatgaaaatgaagc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4204 ctacagacatttttggcgtgttcgtgaagaacacattggttcatattatgaaaatgaagc 4263
Query: 168 tcgaatctttactaggcaaagttcttcacttgattcatctttgtgttgtcattttcctgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 4264 tcgaatctttactaggcaaagttcttcacttgattcatctttgtgttgtcaataacctgg 4323
Query: 228 cagactttgaacgaatattttggcatgagtatcatcttgacgagtctgagaatgggtttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4324 cagactttgaacgaatattttggcatgagtatcatcttgacgagtctgagaatgggtttt 4383
Query: 288 atcatagtatcggatctttactctacaattttctatcttcggatgactttaacgtagaga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4384 atcatagtatcggatctttactctacaattttctatcttcggatgactttaacgtagaga 4443
Query: 348 atggtaagatcagagagatattccgatttttgaaagatcgggcaccacacattaatgtgg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4444 atggtaagatcagagagatattccgatttttgaaagatcgggcaccacacattaatgtgg 4503
Query: 408 acgattacctctcagaacagactccaaattatgaccccagaattttgttcactgatataa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4504 acgattacctctcagaacagactccaaattatgaccccagaattttgttcactgatataa 4563
Query: 468 gtgaatcggaaaacgaggagtacattaagaagaagatgttagcanagtcgagaagagaaa 527
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4564 gtgaatcggaaaacgaggagtacattaagaagaagatgttagcaaagtcgagaagagaaa 4623
Query: 528 aacttatgcagaagctagccaaacaacanaaagaattcatggnatacaancatgtttctg 587
|||||||||||||||||||||||||||| || |||||||||| |||| |||||||||
Sbjct: 4624 aacttatgcagaagctagccaaacaacaaaaggaattcatggataacaacaatgtttctg 4683
Query: 588 cagaggatattagctcac-aggaaccaatctcgat-actctgctatcgttatatgttgga 645
|||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||
Sbjct: 4684 cagaggatattagctcacaaggaaccaatctcgataactctgctatcggtatatgttgga 4743
Query: 646 ccatatccgg-agatgattgtgtatttttgcagatgcccaaagattatgatgttttatca 704
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4744 -catatccggaagatgattgtgtattttgcaagatgcccaaagattatgatgttttatca 4802
Query: 705 taactttgnatttgtcgaacgncaatgttggtttct-tcaattttaacttccggatgaca 763
| |||||| |||||||||||| ||||||| |||||| |||| |||| ||| |||||||||
Sbjct: 4803 t-actttgtatttgtcgaacg-caatgtt-gtttctatcaa-tttagctt-cggatgaca 4857
Query: 764 aaaccagaggatgtagaattt 784
||| || ||||||||||||||
Sbjct: 4858 aaa-caaaggatgtagaattt 4877
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6920
Number of Sequences: 1807
Number of extensions: 6920
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)