BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH01FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1082 0.0
>3x_Contig1641
Length = 13261
Score = 1082 bits (546), Expect = 0.0
Identities = 613/628 (97%), Gaps = 6/628 (0%)
Strand = Plus / Plus
Query: 89 atcaccagtaatttggtcaaggactgctttcggagcaggtcccaaacctaaaacagtagc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3822 atcaccagtaatttggtcaaggactgctttcggagcaggtcccaaacctaaaacagtagc 3881
Query: 149 acttcccgctgcaatttgtgttctaccagcatcatgaacaacgtatgagttaactcctaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3882 acttcccgctgcaatttgtgttctaccagcatcatgaacaacgtatgagttaactcctaa 3941
Query: 209 tgcaatagccttagcgaagagctcatccattgtttccttatctggacattttaaagtaat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3942 tgcaatagccttagcgaagagctcatccattgtttccttatctggacattttaaagtaat 4001
Query: 269 ctttgcttgacctcttgccaaccatctgtgagtcatctccggattatatgaagttctact 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4002 ctttgcttgacctcttgccaaccatctgtgagtcatctccggattatatgaagttctact 4061
Query: 329 tggatcacacgcaataagcctaaaacaggctaatgcagcatgacaacattgagcagcgat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4062 tggatcacacgcaataagcctaaaacaggctaatgcagcatgacaacattgagcagcgat 4121
Query: 389 tttccctttagtcattcccaaatcttgcctgataaccaaggccatccttacttcaccagn 448
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4122 tttccctttagtcattcccaaatcttgcctgataaccaaggccatccttacttcaccagg 4181
Query: 449 aatgtcatttangcatatggaatctactgcaatgccatcttcatcttcatcttcatcctc 508
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4182 aatgtcatttaggcatatggaatctactgcaatgccatcttcatcttcatcttcatcctc 4241
Query: 509 agattcgtcttcatcctcgtcctcatcaccatcgtcatgttcactggcatacgcttgctc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4242 agattcgtcttcatcctcgtcctcatcaccatcgtcatgttcactggcatacgcttgctc 4301
Query: 569 atctcgctcagccttaatcttcgctttgttcaacaaatcttggatctcatccttcccttg 628
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||
Sbjct: 4302 atctcgctcagccttaatcttcgcttgtttcaacaattcttgtatctcatcctt-ccttg 4360
Query: 629 atggtgtttatctgtccaagaaaatattcagtttgtcaaagaataatgctgacaggcgtg 688
|||||| |||||||||||||| ||||| ||| |||||| || |||||||||||| |||||
Sbjct: 4361 atggtg-ttatctgtccaagataatatccag-ttgtcagag-ataatgctgaca-gcgtg 4416
Query: 689 aacaacactgcttaaattcaacgatgat 716
||||||||||| ||||||||||||||||
Sbjct: 4417 aacaacactgc-taaattcaacgatgat 4443
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,984
Number of Sequences: 1807
Number of extensions: 12984
Number of successful extensions: 212
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)