BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH01RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1608 1584 0.0
>3x_Contig1608
Length = 13037
Score = 1584 bits (799), Expect = 0.0
Identities = 844/854 (98%), Gaps = 4/854 (0%)
Strand = Plus / Plus
Query: 48 tcactttgaagcatttcgtacataggatcaatttctgattttttcagctttcctttattt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6577 tcactttgaagcatttcgtacataggatcaatttctgattttttcagctttcctttattt 6636
Query: 108 tactgcaaagagaagccttagaggtctgaagccaactttgacatttaggtcagatcaact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6637 tactgcaaagagaagccttagaggtctgaagccaactttgacatttaggtcagatcaact 6696
Query: 168 aaagatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttaggtttaatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6697 aaagatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttaggtttaatt 6756
Query: 228 tggtacagtgtaatggatgagcatcgatcaaggacaccaagtatagatagtaggaattat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6757 tggtacagtgtaatggatgagcatcgatcaaggacaccaagtatagatagtaggaattat 6816
Query: 288 gctattccagaagcggattacctcccggcaggcattgacatagatagaaacggtgtgtct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6817 gctattccagaagcggattacctcccggcaggcattgacatagatagaaacggtgtgtct 6876
Query: 348 gaatcagatgattcttccgatgatgatgctcaaagttcactatttccaacagaatccagt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6877 gaatcagatgattcttccgatgatgatgctcaaagttcactatttccaacagaatccagt 6936
Query: 408 ggtacgttgtggatgaaccaaatccaagatacgcctatgtttgactcaagtaaatttcta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6937 ggtacgttgtggatgaaccaaatccaagatacgcctatgtttgactcaagtaaatttcta 6996
Query: 468 tttgagtcggtaaataatgcaataaacgatattgacttttcggaatcccttgcaatacaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6997 tttgagtcggtaaataatgcaataaacgatattgacttttcggaatcccttgcaatacaa 7056
Query: 528 gcaaagacatctgcattgattaattcgaagagccgggagttgaaaggccttattaagcaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7057 gcaaagacatctgcattgattaattcgaagagccgggagttgaaaggccttattaagcaa 7116
Query: 588 ttacaggagaaagtagattactataatgaaaggtttaagcgcggagctgttgtatcaagc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7117 ttacaggagaaagtagattactataatgaaaggtttaagcgcggagctgttgtatcaagc 7176
Query: 648 caattgaaggttaacctacagatgctttcgaaacggattgcaactttggatgacctcttc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7177 caattgaaggttaacctacagatgctttcgaaacggattgcaactttggatgacctcttc 7236
Query: 708 tccaaacagtttcctatcgaatataatcagtcgaaggaaaaggtgatggaacgaacatta 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7237 tccaaacagtttcctatcgaatataatcagtcgaaggaaaaggtgatggaacgaacatta 7296
Query: 768 aatgattgattattgaaaaatatatatacataccttgtgttttttattgggaaaggccat 827
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 7297 aatgattgattattgaaaaatatatatacataccttgtgttttttatt-ggaaaagccat 7355
Query: 828 tattaagtttg-tgntaaaaagagcagttatcctactcttca-acttcgaatcccactat 885
||||||||||| || |||| ||||||||||||||||||| || ||||||| ||| |||||
Sbjct: 7356 tattaagtttgttgttaaagagagcagttatcctactctccacacttcgactccaactat 7415
Query: 886 gttgaaatttggaa 899
| ||||||||||||
Sbjct: 7416 g-tgaaatttggaa 7428
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7528
Number of Sequences: 1807
Number of extensions: 7528
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)