BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZH02FM1.SCF screened BAC_end
         (1032 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig185                                                          632   0.0  

>3x_Contig185 
          Length = 1072

 Score =  632 bits (319), Expect = 0.0
 Identities = 368/382 (96%), Gaps = 2/382 (0%)
 Strand = Plus / Plus

                                                                       
Query: 86  taagcaaagcgagaatctttcactggattacagagatatgatggggaaacatactccgtg 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  taagcaaagcgagaatctttcactggattacagagatatgatggggaaacatactccgtg 156

                                                                       
Query: 146 cgggctgcaaagagtgaatagggtaaaaaaaaagaactcaattcaacggagttgagttcg 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cgggctgcaaagagtgaatagggtaaaaaaaaagaactcaattcaacggagttgagttcg 216

                                                                       
Query: 206 aactttaaaaatttttctcttagcccctgtgatccaatagcatgtagcgtgtaaactccg 265
           ||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aactttaaaaatttgaccattagcccctgtgatccaatagcatgtagcgtgtaaactccg 276

                                                                       
Query: 266 taggataatggtctaatggttttcgacccggtcattccagtgtggatcttttacaaaaca 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taggataatggtctaatggttttcgacccggtcattccagtgtggatcttttacaaaaca 336

                                                                       
Query: 326 gcagttgtttccagggatgttgagttacgttggatctttcgataatatncctataattct 385
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 337 gcagttgtttccagggatgttgagttacgttgtatctttcgataatatccctataattct 396

                                                                       
Query: 386 cgggaagtatttcattttttttttggatcatccatttttttccttcaatgttaacgttat 445
           ||| | |||||||||||||||||| |||||| ||||||||||||||| |||| |||||||
Sbjct: 397 cggtatgtatttcatttttttttt-gatcattcatttttttccttcattgtttacgttat 455

                                 
Query: 446 tttggacggaggaaaacaactg 467
           ||| ||| ||||||||||||||
Sbjct: 456 ttt-gactgaggaaaacaactg 476


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,876
Number of Sequences: 1807
Number of extensions: 27876
Number of successful extensions: 2338
Number of sequences better than 1.0e-20: 1
length of query: 1032
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1016
effective length of database: 10,329,639
effective search space: 10494913224
effective search space used: 10494913224
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)