BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH02RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig948 1620 0.0
>3x_Contig948
Length = 3578
Score = 1620 bits (817), Expect = 0.0
Identities = 904/922 (98%), Gaps = 9/922 (0%)
Strand = Plus / Minus
Query: 48 atagaaacttcctcctgaattttgactctgaagtcaccagaaccatttaaattcggtaca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 atagaaacttcctcctgaattttgactctgaagtcaccagaaccatttaaattcggtaca 1012
Query: 108 aggtttggtccgcataatttcgtctcgacgtgtttcttgggtcttcccctcggtttcttc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 aggtttggtccgcataatttcgtctcgacgtgtttcttgggtcttcccctcggtttcttc 952
Query: 168 accaaatttaccttatgttgtttgatatcacatttattattcgaatgtatcaatttacta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 accaaatttaccttatgttgtttgatatcacatttattattcgaatgtatcaatttacta 892
Query: 228 tactgtcgcaaatccataccaacagaggtgttagggttgagattagcacctgtcttagac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tactgtcgcaaatccataccaacagaggtgttagggttgagattagcacctgtcttagac 832
Query: 288 attatcaatgtcagtataaccttaaaagtacccctgtttttttacgtcgaaataagatgc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 attatcaatgtcagtataaccttaaaagtacccctgtttttttacgtcgaaataagatgc 772
Query: 348 tgaatagcaacaaaggaccctggaaaaatatcaatcaattaaattcaagattaataatgt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgaatagcaacaaaggaccctggaaaaatatcaatcaattaaattcaagattaataatgt 712
Query: 408 atttcaccttggatttcagatcaaagacgttaccagttgctgttaacgcgctctattctt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 atttcaccttggatttcagatcaaagacgttaccagttgctgttaacgcgctctattctt 652
Query: 468 gaatattttgtatctaatcatcgtgtttttttaagatgaatcattttcgtttttaagtaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaatattttgtatctaatcatcgtgtttttttaagatgaatcattttcgtttttaagtaa 592
Query: 528 gtgtgaaagatatatgtccgtcagcaaaaaggcctaattgagtaattacaaggacaccaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gtgtgaaagatatatgtccgtcagcaaaaaggcctaattgagtaattacaaggacaccaa 532
Query: 588 gtgagatataacaaagagatttgggtagatgagggatgagggatttgacggtgtaaagtt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtgagatataacaaagagatttgggtagatgagggatgagggatttgacggtgtaaagtt 472
Query: 648 gaatgtatggatgtattttgggcttgatatttcaatactttaccttttgcgtgaaattct 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaatgtatggatgtattttgggcttgatatttcaatactttaccttttgcgtgaaattct 412
Query: 708 actgtggagtgaggtgacattgcacttttgcccgagcgtaatacacaatcacctggcttt 767
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 411 actgtggagtgaggtgacattgcacttttgccgaagcgtaatacacaatcacctggcttt 352
Query: 768 catagactgacgtgtgtaccattatt-attgactac-taaacaataaa-gatgtgatgca 824
|||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 351 catagactgacgtgtgtaccattattaattgactacttaaacaataaaggatgtgatgca 292
Query: 825 aagaagtcgagctggat-attnttaatcc-agcatatatatgaaaactccgaaag-aacc 881
|||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||
Sbjct: 291 aagaggtcgagctggataatttttaatccaagcatatatatgaaaactccgaaagaaacc 232
Query: 882 tgnccaat-aaatgtcaacgcgtacaatagtataata-gcgtaaaaactgagttga-tat 938
|| ||||| ||||||| |||||||||||||||||||| |||||||| ||||||||| |||
Sbjct: 231 tgcccaataaaatgtcgacgcgtacaatagtataataggcgtaaaacctgagttgattat 172
Query: 939 ttactncctgaattcaaaaact 960
||||| ||||| ||||||||||
Sbjct: 171 ttacttcctgagttcaaaaact 150
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6860
Number of Sequences: 1807
Number of extensions: 6860
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)