BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH03RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1199 1400 0.0
>3x_Contig1199
Length = 6044
Score = 1400 bits (706), Expect = 0.0
Identities = 731/737 (99%), Gaps = 2/737 (0%)
Strand = Plus / Minus
Query: 177 accgtctggatcgtgaactaaatgcgaagttaaaggagttaaagaaaagtattgatgaat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6030 accgtctggatcgtgaactaaatgcgaagttaaaggagttaaagaaaagtattgatgaat 5971
Query: 237 gctaccagcagagaacacagttaatctcagatttagatgatgtgaaaaaaaattcagttg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5970 gctaccagcagagaacacagttaatctcagatttagatgatgtgaaaaaaaattcagttg 5911
Query: 297 tcagttctgatgatatggacaaccaaatggttgaacgatttaaagaaatggctacagaga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5910 tcagttctgatgatatggacaaccaaatggttgaacgatttaaagaaatggctacagaga 5851
Query: 357 ttgagcttgtatcaaatcaatataaagaagaggcttctaaagatgcttcaaaagagaagt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5850 ttgagcttgtatcaaatcaatataaagaagaggcttctaaagatgcttcaaaagagaagt 5791
Query: 417 ttgaaacattcaaaagtgtacatgtccccaaattacaaacaatttcgcaagcaatgttca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5790 ttgaaacattcaaaagtgtacatgtccccaaattacaaacaatttcgcaagcaatgttca 5731
Query: 477 ataaagcttccacgaatttagatacaaaagctactgtccagcagaagttgcaacagttgt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 ataaagcttccacgaatttagatacaaaagctactgtccagcagaagttgcaacagttgt 5671
Query: 537 acctttccgttgcaaaatcgcagatgagcgtaataatggtgaagtcggtgttaactaaag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5670 acctttccgttgcaaaatcgcagatgagcgtaataatggtgaagtcggtgttaactaaag 5611
Query: 597 acgttaagaccaatatgaagtttttgaagaatgaagaactgaaattatctcaagtattgg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5610 acgttaagaccaatatgaagtttttgaagaatgaagaactgaaattatctcaagtattgg 5551
Query: 657 atttgcctatgtgttatggattgtatttgattgagttatacagagagcagctctggacag 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5550 atttgcctatgtgttatggattgtatttgattgagttatacagagagcagctctggacag 5491
Query: 717 accgttactctcaacttcgacaac-acatgaatcttcattgcagcatcttttggatgacg 775
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5490 accgttactctcaacttcgacaacaacatgaatcttcattgcagcatcttttggatgacg 5431
Query: 776 aagtacgacaaagaaactcttggtacaaagaatttccaatggataactcgatttctagat 835
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5430 aagtacgacaaagaaactcttggtacaaag-atttccaatggataactcgatttctagat 5372
Query: 836 gttgatagnttgctaccatcatcagtatacatttcgtccataagtgatcattaacagttg 895
|||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 5371 gttgatagtttgctaccatcatcagtatacattccgtccataagtgatcataaacaggtg 5312
Query: 896 acattgtctcagattaa 912
|||||||||||||||||
Sbjct: 5311 acattgtctcagattaa 5295
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7865
Number of Sequences: 1807
Number of extensions: 7865
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)