BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH04FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig979 763 0.0
3x_Contig409 276 8e-74
>3x_Contig979
Length = 3913
Score = 763 bits (385), Expect = 0.0
Identities = 438/452 (96%), Gaps = 3/452 (0%)
Strand = Plus / Plus
Query: 242 gctttgtgccaaatgctccacatatggtcgctacagggtcgtacgatggagtagttagat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctttgtgccaaatgctccacatatggtcgctacagggtcgtacgatggagtagttagat 60
Query: 302 tgtacgatattagaacgaaatcagataaaccacagacaactttggatcacggtcttcctg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtacgatattagaacgaaatcagataaaccacagacaactttggatcacggtcttcctg 120
Query: 362 tggaagatatcacagccatatctcctactcagcttgcatcgtgtggtggtaacgggttca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggaagatatcacagccatatctcctactcagcttgcatcgtgtggtggtaacgggttca 180
Query: 422 aagtatgggacttgactagcgatagagccctttgtgaacgtcanaatttcgcaaagacgg 481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 181 aagtatgggacttgactagcgatagagccctttgtgaacgtcaaaatttcgcaaagacgg 240
Query: 482 tcacctgtttgtattacacaaatatgggagaagaatcaccaatgagtttccgtactagtt 541
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 241 tcacctgtttgaattacacaaatatgggagaagaatcaccaatgag-ttccgtactagtt 299
Query: 542 gcatcctcgcttgatggtcatgttaagatctttttccccgttggagaacttccaattcaa 601
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 300 gcatcctcgcttgatggtcatgttaagatc-ttttccccgttggagaacttccaattcaa 358
Query: 602 gtttggctgggagttttaccacgctgggctaagttgtgcagtcttaccaggcgatgcgc- 660
|||||||||| ||||| | |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 359 gtttggctggaagtttagcaacgctgtgctaagttgtgcagtctcaccaggcgatgcgca 418
Query: 661 aggtaataaacttttcgttggagttttatcct 692
||||||||||| |||||||| || ||||||||
Sbjct: 419 aggtaataaacatttcgttgcaggtttatcct 450
>3x_Contig409
Length = 2404
Score = 276 bits (139), Expect = 8e-74
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 86 cgtcgcatcctacgcatgtgacgaagtttcacgatcaggataacaagactttggtgacgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 cgtcgcatcctacgcatgtgacgaagtttcacgatcaggataacaagactttggtgacgg 2325
Query: 146 caaacgacgatagagtagtgagactatgggatgtttctcatgcttatgaacccactttac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2326 caaacgacgatagagtagtgagactatgggatgtttctcatgcttatgaacccactttac 2385
Query: 206 agttaactggagcatctga 224
|||||||||||||||||||
Sbjct: 2386 agttaactggagcatctga 2404
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5549
Number of Sequences: 1807
Number of extensions: 5549
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 2
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)